# HG changeset patch # User stef # Date 1419861695 18000 # Node ID c8b7098539a7aae16a72e2919dfc8fb2385cee38 # Parent 23f597e18b16ffec8bc786b39040cf11b5d095d5 Uploaded diff -r 23f597e18b16 -r c8b7098539a7 README.rst --- a/README.rst Mon Dec 29 07:16:04 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ -FALCO Amplicon Analysis Pipeline & Galaxy wrapper -======================================== - -FALCO variant-caller is part of the Amplicon Analysis Pipeline (AAP). - -The typical workflow is as follows: -* paired-end amplicon sequencing -* merge pairs by overlapping them -* map the single read fastq with BWA -* perform variant calling with FALCO -* create (html) report of the results - -FALCO uses samtools and straight-forward statistics to determine wether a -potential variant is likely a (technical) artifact or not. - -Input / Output - -Input of the caller is a BAM file, output VCF - - -History - -============== ================================================================ -Date Changes --------------- ---------------------------------------------------------------- -December 2014 * first release in Test Tool Shed -============== ================================================================ - - -Bug Reports & other questions -============================= - -Issues can be reported via http://www.tgac.nl/