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<tool id="wigmaker" name="WigMaker" version="3">
  <description>for BED files</description>

  <requirements>
    <requirement type="package" version="3">wigmaker</requirement>
  </requirements>

  <command interpreter="bash">wigmaker.sh $input $output \$JAVA_JAR_PATH/WigMaker3.jar</command>
  <inputs>
    <param format="interval" name="input" type="data" label="Source file"/>
  </inputs>
  <outputs>
    <data format="wig" name="output" label="${tool.name} on ${on_string} (wig)" />
  </outputs>
 
  <tests>
    <test>
      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file" file="fa_gc_content_output.txt"/>
    </test>
  </tests>

  <help>
     This tool generates WIG files from BED files. (Developped by Tao Ye).
  </help>
</tool>