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<?xml version="1.0"?>
<tool_dependency>
    <package name="bcftools" version="0.1.17">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2/download</action>
                <action type="shell_command">make</action>
                <action type="make_directory">$INSTALL_DIR/bin</action>
                <action type="move_file">
                    <source>bcftools/bcftools</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>

        </install>
        <readme>

Program: bcftools (Tools for data in the VCF/BCF formats)
Version: 0.1.17-dev (r973:277)

Usage:   bcftools &lt;command&gt; &lt;arguments&gt;

Command: view      print, extract, convert and call SNPs from BCF
         index     index BCF
         cat       concatenate BCFs
         ld        compute all-pair r^2
         ldpair    compute r^2 between requested pairs

        </readme>
    </package>
</tool_dependency>