Mercurial > repos > slegras > package_bcftools_0_1_17
changeset 0:196cb9fb737c draft default tip
Uploaded
| author | slegras |
|---|---|
| date | Fri, 27 Feb 2015 05:30:27 -0500 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Feb 27 05:30:27 2015 -0500 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bcftools" version="0.1.17"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2/download</action> + <action type="shell_command">make</action> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="move_file"> + <source>bcftools/bcftools</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + + </install> + <readme> + +Program: bcftools (Tools for data in the VCF/BCF formats) +Version: 0.1.17-dev (r973:277) + +Usage: bcftools <command> <arguments> + +Command: view print, extract, convert and call SNPs from BCF + index index BCF + cat concatenate BCFs + ld compute all-pair r^2 + ldpair compute r^2 between requested pairs + + </readme> + </package> +</tool_dependency> \ No newline at end of file