# HG changeset patch
# User slegras
# Date 1425033027 18000
# Node ID 196cb9fb737ca64eca505a83bc7880d415fdbaf4

Uploaded

diff -r 000000000000 -r 196cb9fb737c tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Feb 27 05:30:27 2015 -0500
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bcftools" version="0.1.17">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2/download</action>
+                <action type="shell_command">make</action>
+                <action type="make_directory">$INSTALL_DIR/bin</action>
+                <action type="move_file">
+                    <source>bcftools/bcftools</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+
+        </install>
+        <readme>
+
+Program: bcftools (Tools for data in the VCF/BCF formats)
+Version: 0.1.17-dev (r973:277)
+
+Usage:   bcftools &lt;command&gt; &lt;arguments&gt;
+
+Command: view      print, extract, convert and call SNPs from BCF
+         index     index BCF
+         cat       concatenate BCFs
+         ld        compute all-pair r^2
+         ldpair    compute r^2 between requested pairs
+
+        </readme>
+    </package>
+</tool_dependency>
\ No newline at end of file