Mercurial > repos > simon-gladman > barrnap
changeset 6:409688c460e0
Changed version of barrnap to 0.3 and used IUC's package.
| author | slugger70@gmail.com |
|---|---|
| date | Tue, 26 Aug 2014 16:43:56 +1000 |
| parents | b3cf551dc5f4 |
| children | 54317fa6c477 |
| files | barrnap_wrapper.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 16 deletions(-) [+] |
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--- a/barrnap_wrapper.xml Tue Sep 03 00:08:18 2013 -0400 +++ b/barrnap_wrapper.xml Tue Aug 26 16:43:56 2014 +1000 @@ -1,7 +1,7 @@ -<tool id="barrnap" name="barrnap" version="1.0.0"> +<tool id="barrnap" name="barrnap" version="1.0.1"> <description>Locate bacterial ribosomal RNA's in a fasta file. (GFF output)</description> <requirements> - <requirement type="package" version="0.1">package_barrnap_0_1</requirement> + <requirement type="package" version="0.3">package_barrnap_0_3</requirement> </requirements> <command> barrnap
--- a/tool_dependencies.xml Tue Sep 03 00:08:18 2013 -0400 +++ b/tool_dependencies.xml Tue Aug 26 16:43:56 2014 +1000 @@ -1,18 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="package_barrnap_0_1" version="0.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://www.vicbioinformatics.com/barrnap-0.1.tar.gz</action> - <action type="move_directory_files"> - <source_directory>.</source_directory> - <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/barrnap</action> - </actions> - </install> + <package name="package_barrnap_0_3" version="0.3"> + <repository name="package_barrnap_0_3" /> </package> </tool_dependency>