Mercurial > repos > shians > shrnaseq
changeset 50:8be46b8eb24b
- Back to old version
| author | shian_su <registertonysu@gmail.com> |
|---|---|
| date | Thu, 20 Nov 2014 16:13:18 +1100 |
| parents | ea30122e8dcf |
| children | 667e683c143b |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 22 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Thu Nov 20 15:57:28 2014 +1100 +++ b/tool_dependencies.xml Thu Nov 20 16:13:18 2014 +1100 @@ -1,6 +1,26 @@ <?xml version="1.0"?> <tool_dependency> - <package name="shrnaseq" version="1.2.1"> - <repository changeset_revision="d2ef31a1ed1b" name="package_shrnaseq_1_2_1" owner="shians" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="R_3_1_1" version="3.1.1"> + <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" /> + </package> + <package name="shrnaseq" version="1.0.10"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + + <repository name="package_r_3_1_1" owner="fubar"> + <package name="R_3_1_1" version="3.1.1" /> + </repository> + <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package> + <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package> + <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package> + <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package> + </action> + </actions> + </install> + <readme> + shrnaseq analysis using edgeR bioConductor package. + http://bioconductor.org/packages/release/bioc/html/edgeR.html + </readme> </package> </tool_dependency>