# HG changeset patch
# User shian_su <registertonysu@gmail.com>
# Date 1416460398 -39600
# Node ID 8be46b8eb24b6bc8a7a12d16b748212e09be006e
# Parent  ea30122e8dcfd92062d3d6b52af4820cbb6f179e
- Back to old version

diff -r ea30122e8dcf -r 8be46b8eb24b tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 20 15:57:28 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 16:13:18 2014 +1100
@@ -1,6 +1,26 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="shrnaseq" version="1.2.1">
-        <repository changeset_revision="d2ef31a1ed1b" name="package_shrnaseq_1_2_1" owner="shians" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="R_3_1_1" version="3.1.1">
+        <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
+    </package>
+    <package name="shrnaseq" version="1.0.10">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    
+                    <repository name="package_r_3_1_1" owner="fubar">
+                        <package name="R_3_1_1" version="3.1.1" />
+                    </repository>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            shrnaseq analysis using edgeR bioConductor package.
+            http://bioconductor.org/packages/release/bioc/html/edgeR.html
+        </readme>
     </package>
 </tool_dependency>