Mercurial > repos > shians > shrnaseq

changeset 4:10eaf4d546e9

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Added Tool Dependency File
author shian_su <registertonysu@gmail.com>
date Thu, 17 Jul 2014 12:11:13 +1000
parents 2ce545c85287
children c81dfc4de25a
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jul 17 12:11:13 2014 +1000
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.0.3">
+        <repository name="package_r_3_0_3" owner="iuc" prior_installation_required="True" />
+    </package>
+    <package name="shrnaseq" version="1.0.10">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+
+                    <repository name="package_r_3_0_3" owner="iuc">
+                        <package name="R" version="3.0.3" />
+                    </repository>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/locfit_1.5-9.1.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/statmod_1.4.20.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/limma_3.20.7.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/edgeR_3.6.2.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+          shrnaseq analysis using edgeR bioConductor package.
+          http://bioconductor.org/packages/release/bioc/html/edgeR.html
+        </readme>
+    </package>
+</tool_dependency>