# HG changeset patch
# User shian_su <registertonysu@gmail.com>
# Date 1405563073 -36000
# Node ID 10eaf4d546e9b49c5803d26c7f9141bc285628c7
# Parent  2ce545c852875fee3de7d2eeb1608537b0151268
Added Tool Dependency File

diff -r 2ce545c85287 -r 10eaf4d546e9 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jul 17 12:11:13 2014 +1000
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.0.3">
+        <repository name="package_r_3_0_3" owner="iuc" prior_installation_required="True" />
+    </package>
+    <package name="shrnaseq" version="1.0.10">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+
+                    <repository name="package_r_3_0_3" owner="iuc">
+                        <package name="R" version="3.0.3" />
+                    </repository>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/locfit_1.5-9.1.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/statmod_1.4.20.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/limma_3.20.7.tar.gz</package>
+                    <package>https://github.com/Shians/diffexp/tree/master/dependencies/edgeR_3.6.2.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+          shrnaseq analysis using edgeR bioConductor package.
+          http://bioconductor.org/packages/release/bioc/html/edgeR.html
+        </readme>
+    </package>
+</tool_dependency>