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changeset 13:ecf3ba958543 draft

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Test
author serranop
date Fri, 13 Sep 2013 16:01:36 -0400
parents eec0db6ca419
children da2055e5a886
files usearch_fastq_mergepairs.xml
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/usearch_fastq_mergepairs.xml	Fri Sep 13 15:55:44 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Fri Sep 13 16:01:36 2013 -0400
@@ -3,12 +3,13 @@
     <version_command>usearch -version</version_command>
     <command interpreter='bash'>usearch_wrapper.sh
 usearch
--fastq_minovlen 0
 -quiet
 -fastq_mergepairs '$input_forward'
 -reverse '$input_reverse'
-#if $minovlen != '0':
--fastq_minovlen $minovlen
+#if $minovlen == '0'
+    -fastq_minovlen 1
+#else
+    -fastq_minovlen $minovlen
 #end if
 -fastq_qmax $qmax
 -fastqout '$output'