# HG changeset patch
# User serranop
# Date 1379102496 14400
# Node ID ecf3ba9585434a68a68a45cd2e5a85d3215b5b83
# Parent  eec0db6ca4193048f2910fee783412b82bd23f4d
Test

diff -r eec0db6ca419 -r ecf3ba958543 usearch_fastq_mergepairs.xml
--- a/usearch_fastq_mergepairs.xml	Fri Sep 13 15:55:44 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Fri Sep 13 16:01:36 2013 -0400
@@ -3,12 +3,13 @@
     <version_command>usearch -version</version_command>
     <command interpreter='bash'>usearch_wrapper.sh
 usearch
--fastq_minovlen 0
 -quiet
 -fastq_mergepairs '$input_forward'
 -reverse '$input_reverse'
-#if $minovlen != '0':
--fastq_minovlen $minovlen
+#if $minovlen == '0'
+    -fastq_minovlen 1
+#else
+    -fastq_minovlen $minovlen
 #end if
 -fastq_qmax $qmax
 -fastqout '$output'