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changeset 18:3d867f8a07ef draft

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planemo upload for repository https://github.com/sblanck/smagexp/tree/master/smagexp_tools commit 840095a764f473452cdef12053ca9b255267237e-dirty
author sblanck
date Sat, 16 Dec 2017 10:18:15 -0500
parents ef7d98f9eb51
children c08d47a36c1f
files Analyse.xml GEOQuery.xml ImportDataFromMatrix.xml
diffstat 3 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/Analyse.xml	Thu Dec 14 04:34:43 2017 -0500
+++ b/Analyse.xml	Sat Dec 16 10:18:15 2017 -0500
@@ -3,14 +3,14 @@
     <description>Performs gene expression analysis thanks to limma</description>
 
     <requirements>
-        <requirement type="package">bioconductor-biobase</requirement>
-        <requirement type="package">bioconductor-geoquery</requirement>
+        <requirement type="package" version="2.38.0">bioconductor-biobase</requirement>
+        <requirement type="package" version="2.46.3">bioconductor-geoquery</requirement>
         <requirement type="package">bioconductor-geometadb</requirement>
         <requirement type="package">bioconductor-limma</requirement>
-        <requirement type="package">bioconductor-biobase</requirement>
         <requirement type="package">bioconductor-affy</requirement>
         <requirement type="package">r-jsonlite</requirement>
         <requirement type="package">r-dplyr</requirement>
+        <requirement type="package">r-optparse</requirement>
      </requirements>
 
     <stdio>
--- a/GEOQuery.xml	Thu Dec 14 04:34:43 2017 -0500
+++ b/GEOQuery.xml	Sat Dec 16 10:18:15 2017 -0500
@@ -3,8 +3,8 @@
     <description>GEOQuery wrapper</description>
 
     <requirements>
-        <requirement type="package">bioconductor-geoquery</requirement>
-        <requirement type="package">r-optparse</requirement>
+        <requirement type="package" version="2.42.0">bioconductor-geoquery</requirement>
+        <requirement type="package" version="1.4.4">r-optparse</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
--- a/ImportDataFromMatrix.xml	Thu Dec 14 04:34:43 2017 -0500
+++ b/ImportDataFromMatrix.xml	Sat Dec 16 10:18:15 2017 -0500
@@ -9,6 +9,7 @@
         <requirement type="package">bioconductor-limma</requirement>
         <requirement type="package">bioconductor-biobase</requirement>
         <requirement type="package">bioconductor-affy</requirement>
+        <requirement type="package">bioconductor-affyplm</requirement>
         <requirement type="package">r-jsonlite</requirement>
         <requirement type="package">r-dplyr</requirement>
         <requirement type="package">r-optparse</requirement>