|
1
|
1 <tool id="mothur-otu-addblast" name="Mothur OTUtable addBLAST" version="1">
|
|
|
2
|
|
|
3 <description>for EMC workflow</description>
|
|
|
4
|
|
|
5 <command interpreter="python">
|
|
|
6 OTUtable_addblast.py $otufile $blastfile $oturepfile
|
|
|
7 </command>
|
|
|
8
|
|
|
9 <inputs>
|
|
|
10 <param name="otufile" type="data" label="Select OTU table (taxonomy output from MOTHUR Classify.otu)" help="choose input file from history"/>
|
|
|
11 <param name="blastfile" type="data" label="Select BLAST output" help="choose input file from history"/>
|
|
|
12 <param name="oturepfile" type="data" label="Select OTU representatives fasta file" help="choose input file from history"/>
|
|
|
13 </inputs>
|
|
|
14
|
|
|
15 <outputs>
|
|
|
16 <data format="txt" name="outputfile" from_work_dir="newtable2.tsv" label="OTU table with BLAST on ${on_string}"/>
|
|
|
17 </outputs>
|
|
|
18
|
|
|
19 <help>
|
|
|
20 description of tool for the users
|
|
|
21 </help>
|
|
|
22 </tool> |
