view macros.xml @ 8:5eb3186cc3b4 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 8f2b9b6c89892710bd5e0d8e35bcd8b645b0e44f

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="1.36.1">mothur</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command>mothur "#help()" | sed '7q;d' | cut -d" " -f2 </version_command>
    </xml>
    <token name="@WRAPPER_VERSION@">1.36.1</token>
    <token name="@MOTHUR_OVERVIEW@">
<![CDATA[

**Mothur Overview**

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team
in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.

.. _Mothur-Wiki: http://www.mothur.org/wiki/Main_Page

]]>
    </token>
    <xml name="labeloptions">
        <options>
            <filter type="data_meta" ref="otu" key="labels"/>
        </options>
    </xml>
    <xml name="logfile-test">
        <output name="logfile" ftype="txt">
            <assert_contents>
                <has_text text="mothur"/>
                <has_text text="@WRAPPER_VERSION@"/>
            </assert_contents>
        </output>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1128/AEM.01541-09</citation>
            <yield/>
        </citations>
    </xml>
</macros>