Mercurial > repos > sanbi-uwc > vcf_snps_utils
changeset 4:9c39be76e559 draft
planemo upload for repository https://github.com/COMBAT-TB/vcf_snps_utils commit a277f88f2a997acde30a91fc0ad52cf96b697e22
| author | sanbi-uwc |
|---|---|
| date | Thu, 16 Aug 2018 09:13:40 -0400 |
| parents | ec601f9af09b |
| children | 796bf12181f6 |
| files | intersect.xml vcf_snps_utils_macros.xml |
| diffstat | 2 files changed, 8 insertions(+), 17 deletions(-) [+] |
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--- a/intersect.xml Thu Aug 16 08:51:43 2018 -0400 +++ b/intersect.xml Thu Aug 16 09:13:40 2018 -0400 @@ -35,15 +35,15 @@ <help> -**What it does** + **What it does** -Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated) + Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated) -Usage: vcf_snps_utils intersect [OPTIONS] [VCFFILES]... CSVFILE + Usage: vcf_snps_utils intersect [OPTIONS] [VCFFILES]... CSVFILE ------ + ----- -**Example** + **Example** VCF snp intersect tool (CSV file). @@ -61,10 +61,10 @@ <http://www.combattb.org/software/tools/> General help using CombatTB software: <http://www.combattb.org/gethelp/> -Options: - --out TEXT set the output directory, default is + Options: + --out TEXT set the output directory, default is "/tmp/vcf_snps_utils_output/" - --help Show this message and exit. + --help Show this message and exit. vcf_snps_utils intersect example.vcf example.csv --out output/test
--- a/vcf_snps_utils_macros.xml Thu Aug 16 08:51:43 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -<macros> - <token name="@TOOL_VERSION@">0.0.2</token> - <xml name="requirements"> - <requirements> - <requirement type="package" version="@TOOL_VERSION@">vcf_snps_utils</requirement> - <yield /> - </requirements> - </xml> -</macros> \ No newline at end of file