Mercurial > repos > sanbi-uwc > package_gatk_sanbi_uwc_3_5
changeset 0:803b845380fa draft
planemo upload for repository https://github.com/zipho/package_gatk_sanbi_uwc_3_5 commit 2da025064f0bfff826fba7ec242592d72dfdcbb2-dirty
| author | sanbi-uwc |
|---|---|
| date | Fri, 01 Apr 2016 06:25:15 -0400 |
| parents | |
| children | 6e86bfabcf7d |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 32 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Apr 01 06:25:15 2016 -0400 @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="gatk_sanbi_uwc" version="3.5"> + <install version="3.5"> + <actions_group> + <actions> + <action type="download_by_url">http://intranet.sanbi.ac.za/GenomeAnalysisTK-3.5.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> + <![CDATA[ + This package is downloadable only within sanbi uwc network. + + The Genome Analysis Toolkit or GATK is a software package for analysis of high-throughput sequencing data, + developed by the Data Science and Data Engineering group at the Broad Institute. + + The toolkit offers a wide variety of tools, with a primary focus on variant discovery and + genotyping as well as strong emphasis on data quality assurance. + Its robust architecture, powerful processing engine and high-performance computing features make it + capable of taking on projects of any size. + ]]> + </readme> + </package> +</tool_dependency> \ No newline at end of file