# HG changeset patch
# User sanbi-uwc
# Date 1459506315 14400
# Node ID 803b845380fa1069fc5e2763d39085beae4024ea

planemo upload for repository https://github.com/zipho/package_gatk_sanbi_uwc_3_5 commit 2da025064f0bfff826fba7ec242592d72dfdcbb2-dirty

diff -r 000000000000 -r 803b845380fa tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Apr 01 06:25:15 2016 -0400
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gatk_sanbi_uwc" version="3.5">
+        <install version="3.5">
+            <actions_group>
+                <actions>
+                    <action type="download_by_url">http://intranet.sanbi.ac.za/GenomeAnalysisTK-3.5.tar.bz2</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+             <![CDATA[
+                    This package is downloadable only within sanbi uwc network.
+
+                    The Genome Analysis Toolkit or GATK is a software package for analysis of high-throughput sequencing data,
+                    developed by the Data Science and Data Engineering group at the Broad Institute.
+
+                    The toolkit offers a wide variety of tools, with a primary focus on variant discovery and
+                    genotyping as well as strong emphasis on data quality assurance.
+                    Its robust architecture, powerful processing engine and high-performance computing features make it
+                    capable of taking on projects of any size.
+            ]]>
+        </readme>
+    </package>
+</tool_dependency>
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