Mercurial > repos > sanbi-uwc > novo_align
changeset 14:13567403bb27 draft
planemo upload for repository https://github.com/zipho/novo_align commit 334d64384b0d56b7d51b950bcfd7751e8dc55373
| author | sanbi-uwc |
|---|---|
| date | Thu, 15 Dec 2016 07:59:13 -0500 |
| parents | bab35d33b28d |
| children | 8553432eb6d8 |
| files | novo_align.py novo_align.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/novo_align.xml Thu Dec 15 07:47:35 2016 -0500 +++ b/novo_align.xml Thu Dec 15 07:59:13 2016 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8" ?> -<tool id="novo_align" name="NOVO ALIGN" version="0.0.2"> +<tool id="novo_align" name="NOVO ALIGN" version="0.0.4"> <description>Tool to run the Novo Align mapping tool</description> <requirements> <requirement type="package" version="1.2">samtools</requirement> @@ -38,7 +38,7 @@ #end if - $__tool_directory__/novo_align.py + python $__tool_directory__/novo_align.py '${out_file}' --index_file ${index1.fields.path} #if $paired_end.is_paired_end
--- a/tool_dependencies.xml Thu Dec 15 07:47:35 2016 -0500 +++ b/tool_dependencies.xml Thu Dec 15 07:59:13 2016 -0500 @@ -3,7 +3,7 @@ <package name="novocraft" version="3.04.01"> <repository changeset_revision="f3d1a01754b6" name="package_novocraft_3_04_01" owner="sanbi-uwc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="samtools" version="0.1.19"> - <repository changeset_revision="a0ab0fae27e5" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="samtools" version="1.2"> + <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>