# HG changeset patch
# User sanbi-uwc
# Date 1481806753 18000
# Node ID 13567403bb2791d0e1fdb2374ce729ea602e6ade
# Parent  bab35d33b28deeb18a1c7fd3643c56940420b497
planemo upload for repository https://github.com/zipho/novo_align commit 334d64384b0d56b7d51b950bcfd7751e8dc55373

diff -r bab35d33b28d -r 13567403bb27 novo_align.py
diff -r bab35d33b28d -r 13567403bb27 novo_align.xml
--- a/novo_align.xml	Thu Dec 15 07:47:35 2016 -0500
+++ b/novo_align.xml	Thu Dec 15 07:59:13 2016 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8" ?>
-<tool id="novo_align" name="NOVO ALIGN" version="0.0.2">
+<tool id="novo_align" name="NOVO ALIGN" version="0.0.4">
     <description>Tool to run the Novo Align mapping tool</description>
     <requirements>
         <requirement type="package" version="1.2">samtools</requirement>
@@ -38,7 +38,7 @@
         #end if
 
 
-        $__tool_directory__/novo_align.py
+        python $__tool_directory__/novo_align.py
             '${out_file}'
             --index_file ${index1.fields.path}
             #if $paired_end.is_paired_end
diff -r bab35d33b28d -r 13567403bb27 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Dec 15 07:47:35 2016 -0500
+++ b/tool_dependencies.xml	Thu Dec 15 07:59:13 2016 -0500
@@ -3,7 +3,7 @@
     <package name="novocraft" version="3.04.01">
         <repository changeset_revision="f3d1a01754b6" name="package_novocraft_3_04_01" owner="sanbi-uwc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="samtools" version="0.1.19">
-        <repository changeset_revision="a0ab0fae27e5" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="1.2">
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>