Mercurial > repos > sanbi-uwc > neo4j_datatypes
changeset 18:3472a853df10 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/datatypes/neo4j_datatypes commit 8e48c62981e1e81254b777ebd5df2436d53a7f10
| author | sanbi-uwc |
|---|---|
| date | Wed, 18 May 2016 10:13:46 -0400 |
| parents | 969c57578047 |
| children | 2287178087eb |
| files | neo4j.py |
| diffstat | 1 files changed, 0 insertions(+), 48 deletions(-) [+] |
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--- a/neo4j.py Wed May 18 10:11:25 2016 -0400 +++ b/neo4j.py Wed May 18 10:13:46 2016 -0400 @@ -19,54 +19,6 @@ derived from html - composite datatype elements stored in extra files path """ - """ - MetadataElement( name='neostore', default=None, desc='Neo4j NeoStore File', readonly=True, visible=True, set_in_upload=True, no_value=None ) - MetadataElement( name='neostore_count_file', default=None, desc='Neo4j Count File', readonly=True, visible=True, set_in_upload=True, no_value=None ) - MetadataElement( name="neostore_labeltokenstore_db_file", default=None, desc="Neostore LabelTokenStore File", readonly=True, visible=True, no_value=None ) - MetadataElement( name="neostore_nodestore_file", default=None, desc="Neostore NodeStore File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_propertystore_file", default=None, desc="Neostore Property Store File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_group_file", default=None, desc="Neostore Relationship Group File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_file", default=None, desc="Neostore Relationship File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_type_file", default=None, desc="Neostore Relationship Type File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_schema_store_file", default=None, desc="Neostore Schema Store File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_transaction_db_file", default=None, desc="Neostore Transaction File", readonly=True, visible=True, no_value=None) - - composite_type = 'auto_primary_file' - allow_datatype_change = False - file_ext = 'neo4j' - - def generate_primary_file( self, dataset=None ): - rval = ['<html><head><title>Neo4j Galaxy Composite Dataset </title></head><p/>'] - rval.append('<div>This composite dataset is composed of the following files:<p/><ul>') - for composite_name, composite_file in self.get_composite_files( dataset=dataset ).iteritems(): - fn = composite_name - opt_text = '' - if composite_file.optional: - opt_text = ' (optional)' - if composite_file.get('description'): - rval.append( '<li><a href="%s" type="application/binary">%s (%s)</a>%s</li>' % ( fn, fn, composite_file.get('description'), opt_text ) ) - else: - rval.append( '<li><a href="%s" type="application/binary">%s</a>%s</li>' % ( fn, fn, opt_text ) ) - rval.append( '</ul></div></html>' ) - return "\n".join( rval ) - - def regenerate_primary_file(self, dataset): - - cannot do this until we are setting metadata - - efp = dataset.extra_files_path - flist = os.listdir(efp) - rval = ['<html><head><title>Files for Composite Dataset %s</title></head><body><p/>Composite %s contains:<p/><ul>' % (dataset.name, dataset.name)] - for i, fname in enumerate(flist): - sfname = os.path.split(fname)[-1] - f, e = os.path.splitext(fname) - rval.append( '<li><a href="%s">%s</a></li>' % ( sfname, sfname) ) - rval.append( '</ul></body></html>' ) - f = file(dataset.file_name, 'w') - f.write("\n".join( rval )) - f.write('\n') - f.close() - """ def get_mime(self): """Returns the mime type of the datatype"""