# HG changeset patch # User sanbi-uwc # Date 1463580826 14400 # Node ID 3472a853df108f1b9b7d2d977b3bd0ec3e121f9c # Parent 969c57578047beede57466f958711e7af3c1bc41 planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/datatypes/neo4j_datatypes commit 8e48c62981e1e81254b777ebd5df2436d53a7f10 diff -r 969c57578047 -r 3472a853df10 neo4j.py --- a/neo4j.py Wed May 18 10:11:25 2016 -0400 +++ b/neo4j.py Wed May 18 10:13:46 2016 -0400 @@ -19,54 +19,6 @@ derived from html - composite datatype elements stored in extra files path """ - """ - MetadataElement( name='neostore', default=None, desc='Neo4j NeoStore File', readonly=True, visible=True, set_in_upload=True, no_value=None ) - MetadataElement( name='neostore_count_file', default=None, desc='Neo4j Count File', readonly=True, visible=True, set_in_upload=True, no_value=None ) - MetadataElement( name="neostore_labeltokenstore_db_file", default=None, desc="Neostore LabelTokenStore File", readonly=True, visible=True, no_value=None ) - MetadataElement( name="neostore_nodestore_file", default=None, desc="Neostore NodeStore File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_propertystore_file", default=None, desc="Neostore Property Store File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_group_file", default=None, desc="Neostore Relationship Group File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_file", default=None, desc="Neostore Relationship File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_relationship_type_file", default=None, desc="Neostore Relationship Type File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_schema_store_file", default=None, desc="Neostore Schema Store File", readonly=True, visible=True, no_value=None) - MetadataElement( name="neostore_transaction_db_file", default=None, desc="Neostore Transaction File", readonly=True, visible=True, no_value=None) - - composite_type = 'auto_primary_file' - allow_datatype_change = False - file_ext = 'neo4j' - - def generate_primary_file( self, dataset=None ): - rval = ['Neo4j Galaxy Composite Dataset

'] - rval.append('

This composite dataset is composed of the following files:

' ) - return "\n".join( rval ) - - def regenerate_primary_file(self, dataset): - - cannot do this until we are setting metadata - - efp = dataset.extra_files_path - flist = os.listdir(efp) - rval = ['Files for Composite Dataset %s

Composite %s contains:

' ) - f = file(dataset.file_name, 'w') - f.write("\n".join( rval )) - f.write('\n') - f.close() - """ def get_mime(self): """Returns the mime type of the datatype"""