Mercurial > repos > sanbi-uwc > lukasa
diff test-data/spaln_out.gff3 @ 1:20c176cd4c3b draft
planemo upload for repository https://github.com/pvanheus/lukasa commit 5f34b6793f0c549e65e25d33b7247c259adedfac
| author | sanbi-uwc |
|---|---|
| date | Mon, 17 Oct 2022 17:15:15 +0000 |
| parents | 7297f56d2d03 |
| children | 715a727e3b65 |
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--- a/test-data/spaln_out.gff3 Tue Oct 13 12:30:39 2020 +0000 +++ b/test-data/spaln_out.gff3 Mon Oct 17 17:15:15 2022 +0000 @@ -1,56 +1,56 @@ ##gff-version 3 ##sequence-region NW_017366533.1 906 39583 -NW_017366533.1 ALN gene 1001 3313 1509 + . ID=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN mRNA 1001 3313 1509 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN cds 1001 1293 92 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 99 152 + -NW_017366533.1 ALN cds 1403 1551 206 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 + -NW_017366533.1 ALN cds 1659 1802 189 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 + +NW_017366533.1 ALN gene 908 3313 1278 + . ID=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN mRNA 908 3313 1278 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN cds 908 1293 -49 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 101 152 + +NW_017366533.1 ALN cds 1403 1551 207 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 + +NW_017366533.1 ALN cds 1659 1802 188 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 + NW_017366533.1 ALN cds 2061 2214 200 + 0 ID=cds1_00004;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 251 301 + -NW_017366533.1 ALN cds 2487 2701 312 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 + -NW_017366533.1 ALN cds 2783 3313 610 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 + -NW_017366533.1 ALN gene 5314 8701 1447 - . ID=gene00002;Name=NW_017366533.1_2 -NW_017366533.1 ALN mRNA 5314 8701 1447 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN cds 2487 2701 311 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 + +NW_017366533.1 ALN cds 2783 3313 608 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 + +NW_017366533.1 ALN gene 5314 8701 1365 - . ID=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN mRNA 5314 8701 1365 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 NW_017366533.1 ALN cds 8528 8701 267 - 0 ID=cds2_00001;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 17 74 + NW_017366533.1 ALN cds 7566 7706 184 - 0 ID=cds2_00002;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 75 121 + NW_017366533.1 ALN cds 7219 7357 242 - 0 ID=cds2_00003;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 122 167 + NW_017366533.1 ALN cds 6929 7041 177 - 2 ID=cds2_00004;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 168 205 + NW_017366533.1 ALN cds 6595 6828 385 - 0 ID=cds2_00005;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 206 284 + -NW_017366533.1 ALN cds 6288 6394 177 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 + -NW_017366533.1 ALN cds 5314 5407 172 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 + -NW_017366533.1 ALN gene 10702 20056 1065 + . ID=gene00003;Name=NW_017366533.1_3 -NW_017366533.1 ALN mRNA 10702 20056 1065 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN cds 6288 6394 178 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 + +NW_017366533.1 ALN cds 5314 5407 173 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 + +NW_017366533.1 ALN gene 10702 20056 995 + . ID=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN mRNA 10702 20056 995 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 NW_017366533.1 ALN cds 10702 10827 208 + 0 ID=cds3_00001;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 31 72 + NW_017366533.1 ALN cds 15802 15903 235 + 0 ID=cds3_00002;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 73 106 + NW_017366533.1 ALN cds 17604 17706 205 + 0 ID=cds3_00003;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 107 140 + -NW_017366533.1 ALN cds 17792 17881 192 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + -NW_017366533.1 ALN cds 18376 18542 310 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 + +NW_017366533.1 ALN cds 17792 17881 191 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + +NW_017366533.1 ALN cds 18376 18542 309 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 + NW_017366533.1 ALN cds 20021 20056 71 + 0 ID=cds3_00006;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 227 238 + -NW_017366533.1 ALN gene 22057 32752 5551 + . ID=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN mRNA 22057 32752 5551 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN cds 22057 22827 845 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 60 308 + -NW_017366533.1 ALN cds 23837 24082 263 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 + +NW_017366533.1 ALN gene 22041 32752 5385 + . ID=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN mRNA 22041 32752 5385 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN cds 22041 22827 965 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 53 308 + +NW_017366533.1 ALN cds 23837 24082 264 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 + NW_017366533.1 ALN cds 24229 24392 270 + 2 ID=cds4_00003;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 388 442 + -NW_017366533.1 ALN cds 24476 24637 279 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 + +NW_017366533.1 ALN cds 24476 24637 280 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 + NW_017366533.1 ALN cds 24718 24791 127 + 0 ID=cds4_00005;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 497 521 + NW_017366533.1 ALN cds 25910 26093 358 + 1 ID=cds4_00006;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 522 582 + NW_017366533.1 ALN cds 26306 26539 433 + 0 ID=cds4_00007;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 583 660 + NW_017366533.1 ALN cds 27205 27296 152 + 0 ID=cds4_00008;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 661 691 + NW_017366533.1 ALN cds 27383 27510 235 + 1 ID=cds4_00009;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 692 733 + -NW_017366533.1 ALN cds 27607 27761 271 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 + +NW_017366533.1 ALN cds 27607 27761 272 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 + NW_017366533.1 ALN cds 28374 28508 266 + 0 ID=cds4_00011;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 786 830 + -NW_017366533.1 ALN cds 28614 28808 351 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 + +NW_017366533.1 ALN cds 28614 28808 350 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 + NW_017366533.1 ALN cds 29603 29785 322 + 0 ID=cds4_00013;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 896 956 + -NW_017366533.1 ALN cds 29869 30052 278 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1020 + -NW_017366533.1 ALN cds 30791 30931 224 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1021 1070 + +NW_017366533.1 ALN cds 29869 30052 264 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1023 + +NW_017366533.1 ALN cds 30791 30931 239 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1024 1070 + NW_017366533.1 ALN cds 31017 31159 249 + 2 ID=cds4_00016;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1071 1118 + NW_017366533.1 ALN cds 31243 31446 346 + 0 ID=cds4_00017;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1119 1186 + -NW_017366533.1 ALN cds 31534 31651 207 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + -NW_017366533.1 ALN cds 32253 32355 196 + 2 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + -NW_017366533.1 ALN cds 32488 32752 323 + 1 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + -NW_017366533.1 ALN gene 34753 39583 2503 + . ID=gene00005;Name=NW_017366533.1_5 -NW_017366533.1 ALN mRNA 34753 39583 2503 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN cds 31534 31651 205 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + +NW_017366533.1 ALN cds 32253 32355 197 + 2 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + +NW_017366533.1 ALN cds 32488 32752 322 + 1 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + +NW_017366533.1 ALN gene 34753 39583 2351 + . ID=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN mRNA 34753 39583 2351 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 NW_017366533.1 ALN cds 34753 34872 272 + 0 ID=cds5_00001;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 1 40 + -NW_017366533.1 ALN cds 35722 35874 296 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 + +NW_017366533.1 ALN cds 35722 35874 297 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 + NW_017366533.1 ALN cds 35986 36078 203 + 0 ID=cds5_00003;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 92 122 + NW_017366533.1 ALN cds 36220 36285 147 + 0 ID=cds5_00004;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 123 144 + NW_017366533.1 ALN cds 36706 36831 249 + 0 ID=cds5_00005;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 145 186 +