Mercurial > repos > sanbi-uwc > lukasa
changeset 1:20c176cd4c3b draft
planemo upload for repository https://github.com/pvanheus/lukasa commit 5f34b6793f0c549e65e25d33b7247c259adedfac
| author | sanbi-uwc |
|---|---|
| date | Mon, 17 Oct 2022 17:15:15 +0000 |
| parents | 7297f56d2d03 |
| children | a2eda8fd2737 |
| files | lukasa.xml test-data/spaln_out.gff3 test-data/spaln_out_no_st.gff3 |
| diffstat | 3 files changed, 68 insertions(+), 69 deletions(-) [+] |
line wrap: on
line diff
--- a/lukasa.xml Tue Oct 13 12:30:39 2020 +0000 +++ b/lukasa.xml Mon Oct 17 17:15:15 2022 +0000 @@ -1,9 +1,9 @@ <tool id="lukasa" name="Lukasa" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> <description>Align protein evidence against genomic contigs using metaeuk and spaln</description> <macros> - <token name="@TOOL_VERSION@">0.0.6</token> + <token name="@TOOL_VERSION@">0.10.0</token> <!-- note that this DOI is for lukasa 0.0.6 - update as needed --> - <token name="@DOI@">10.5281/zenodo.4084863</token> + <token name="@DOI@">10.5281/zenodo.7214490</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">lukasa</requirement> @@ -16,24 +16,24 @@ --output_filename '$output_gff' '$contigs_fasta' '$proteins_fasta' ]]></command> <inputs> - <param name='contigs_fasta' type='data' format='fasta' label='Genomic contigs (FASTA)' /> - <param name='proteins_fasta' type='data' format='fasta' label='Proteins (FASTA)' /> - <param name='species_table' type='text' label='Spaln species table to use (optional)' /> + <param name="contigs_fasta" type="data" format="fasta" label="Genomic contigs (FASTA)"/> + <param name="proteins_fasta" type="data" format="fasta" label="Proteins (FASTA)"/> + <param name="species_table" type="text" label="Spaln species table to use (optional)"/> </inputs> <outputs> - <data name="output_gff" format='gff3' label='Map proteins to genome ${on_string}' /> + <data name="output_gff" format="gff3" label="Map proteins to genome ${on_string}"/> </outputs> <tests> <test> - <param name="contigs_fasta" ftype="fasta" value="contig.fasta" /> - <param name="proteins_fasta" ftype="fasta" value="proteins.fasta" /> - <param name="species_table" value="cynosemi" /> - <output name="output_gff" value="spaln_out.gff3" /> + <param name="contigs_fasta" ftype="fasta" value="contig.fasta"/> + <param name="proteins_fasta" ftype="fasta" value="proteins.fasta"/> + <param name="species_table" value="cynosemi"/> + <output name="output_gff" value="spaln_out.gff3"/> </test> <test> - <param name="contigs_fasta" ftype="fasta" value="contig.fasta" /> - <param name="proteins_fasta" ftype="fasta" value="proteins.fasta" /> - <output name="output_gff" value="spaln_out_no_st.gff3" /> + <param name="contigs_fasta" ftype="fasta" value="contig.fasta"/> + <param name="proteins_fasta" ftype="fasta" value="proteins.fasta"/> + <output name="output_gff" value="spaln_out_no_st.gff3"/> </test> </tests> <help><![CDATA[ @@ -50,4 +50,4 @@ <citations> <citation type="doi">@DOI@</citation> </citations> -</tool> \ No newline at end of file +</tool>
--- a/test-data/spaln_out.gff3 Tue Oct 13 12:30:39 2020 +0000 +++ b/test-data/spaln_out.gff3 Mon Oct 17 17:15:15 2022 +0000 @@ -1,56 +1,56 @@ ##gff-version 3 ##sequence-region NW_017366533.1 906 39583 -NW_017366533.1 ALN gene 1001 3313 1509 + . ID=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN mRNA 1001 3313 1509 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN cds 1001 1293 92 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 99 152 + -NW_017366533.1 ALN cds 1403 1551 206 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 + -NW_017366533.1 ALN cds 1659 1802 189 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 + +NW_017366533.1 ALN gene 908 3313 1278 + . ID=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN mRNA 908 3313 1278 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN cds 908 1293 -49 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 101 152 + +NW_017366533.1 ALN cds 1403 1551 207 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 + +NW_017366533.1 ALN cds 1659 1802 188 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 + NW_017366533.1 ALN cds 2061 2214 200 + 0 ID=cds1_00004;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 251 301 + -NW_017366533.1 ALN cds 2487 2701 312 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 + -NW_017366533.1 ALN cds 2783 3313 610 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 + -NW_017366533.1 ALN gene 5314 8701 1447 - . ID=gene00002;Name=NW_017366533.1_2 -NW_017366533.1 ALN mRNA 5314 8701 1447 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN cds 2487 2701 311 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 + +NW_017366533.1 ALN cds 2783 3313 608 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 + +NW_017366533.1 ALN gene 5314 8701 1365 - . ID=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN mRNA 5314 8701 1365 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 NW_017366533.1 ALN cds 8528 8701 267 - 0 ID=cds2_00001;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 17 74 + NW_017366533.1 ALN cds 7566 7706 184 - 0 ID=cds2_00002;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 75 121 + NW_017366533.1 ALN cds 7219 7357 242 - 0 ID=cds2_00003;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 122 167 + NW_017366533.1 ALN cds 6929 7041 177 - 2 ID=cds2_00004;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 168 205 + NW_017366533.1 ALN cds 6595 6828 385 - 0 ID=cds2_00005;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 206 284 + -NW_017366533.1 ALN cds 6288 6394 177 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 + -NW_017366533.1 ALN cds 5314 5407 172 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 + -NW_017366533.1 ALN gene 10702 20056 1065 + . ID=gene00003;Name=NW_017366533.1_3 -NW_017366533.1 ALN mRNA 10702 20056 1065 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN cds 6288 6394 178 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 + +NW_017366533.1 ALN cds 5314 5407 173 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 + +NW_017366533.1 ALN gene 10702 20056 995 + . ID=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN mRNA 10702 20056 995 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 NW_017366533.1 ALN cds 10702 10827 208 + 0 ID=cds3_00001;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 31 72 + NW_017366533.1 ALN cds 15802 15903 235 + 0 ID=cds3_00002;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 73 106 + NW_017366533.1 ALN cds 17604 17706 205 + 0 ID=cds3_00003;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 107 140 + -NW_017366533.1 ALN cds 17792 17881 192 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + -NW_017366533.1 ALN cds 18376 18542 310 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 + +NW_017366533.1 ALN cds 17792 17881 191 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + +NW_017366533.1 ALN cds 18376 18542 309 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 + NW_017366533.1 ALN cds 20021 20056 71 + 0 ID=cds3_00006;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 227 238 + -NW_017366533.1 ALN gene 22057 32752 5551 + . ID=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN mRNA 22057 32752 5551 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN cds 22057 22827 845 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 60 308 + -NW_017366533.1 ALN cds 23837 24082 263 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 + +NW_017366533.1 ALN gene 22041 32752 5385 + . ID=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN mRNA 22041 32752 5385 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN cds 22041 22827 965 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 53 308 + +NW_017366533.1 ALN cds 23837 24082 264 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 + NW_017366533.1 ALN cds 24229 24392 270 + 2 ID=cds4_00003;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 388 442 + -NW_017366533.1 ALN cds 24476 24637 279 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 + +NW_017366533.1 ALN cds 24476 24637 280 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 + NW_017366533.1 ALN cds 24718 24791 127 + 0 ID=cds4_00005;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 497 521 + NW_017366533.1 ALN cds 25910 26093 358 + 1 ID=cds4_00006;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 522 582 + NW_017366533.1 ALN cds 26306 26539 433 + 0 ID=cds4_00007;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 583 660 + NW_017366533.1 ALN cds 27205 27296 152 + 0 ID=cds4_00008;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 661 691 + NW_017366533.1 ALN cds 27383 27510 235 + 1 ID=cds4_00009;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 692 733 + -NW_017366533.1 ALN cds 27607 27761 271 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 + +NW_017366533.1 ALN cds 27607 27761 272 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 + NW_017366533.1 ALN cds 28374 28508 266 + 0 ID=cds4_00011;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 786 830 + -NW_017366533.1 ALN cds 28614 28808 351 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 + +NW_017366533.1 ALN cds 28614 28808 350 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 + NW_017366533.1 ALN cds 29603 29785 322 + 0 ID=cds4_00013;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 896 956 + -NW_017366533.1 ALN cds 29869 30052 278 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1020 + -NW_017366533.1 ALN cds 30791 30931 224 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1021 1070 + +NW_017366533.1 ALN cds 29869 30052 264 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1023 + +NW_017366533.1 ALN cds 30791 30931 239 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1024 1070 + NW_017366533.1 ALN cds 31017 31159 249 + 2 ID=cds4_00016;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1071 1118 + NW_017366533.1 ALN cds 31243 31446 346 + 0 ID=cds4_00017;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1119 1186 + -NW_017366533.1 ALN cds 31534 31651 207 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + -NW_017366533.1 ALN cds 32253 32355 196 + 2 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + -NW_017366533.1 ALN cds 32488 32752 323 + 1 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + -NW_017366533.1 ALN gene 34753 39583 2503 + . ID=gene00005;Name=NW_017366533.1_5 -NW_017366533.1 ALN mRNA 34753 39583 2503 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN cds 31534 31651 205 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + +NW_017366533.1 ALN cds 32253 32355 197 + 2 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + +NW_017366533.1 ALN cds 32488 32752 322 + 1 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + +NW_017366533.1 ALN gene 34753 39583 2351 + . ID=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN mRNA 34753 39583 2351 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 NW_017366533.1 ALN cds 34753 34872 272 + 0 ID=cds5_00001;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 1 40 + -NW_017366533.1 ALN cds 35722 35874 296 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 + +NW_017366533.1 ALN cds 35722 35874 297 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 + NW_017366533.1 ALN cds 35986 36078 203 + 0 ID=cds5_00003;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 92 122 + NW_017366533.1 ALN cds 36220 36285 147 + 0 ID=cds5_00004;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 123 144 + NW_017366533.1 ALN cds 36706 36831 249 + 0 ID=cds5_00005;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 145 186 +
--- a/test-data/spaln_out_no_st.gff3 Tue Oct 13 12:30:39 2020 +0000 +++ b/test-data/spaln_out_no_st.gff3 Mon Oct 17 17:15:15 2022 +0000 @@ -1,33 +1,33 @@ ##gff-version 3 ##sequence-region NW_017366533.1 906 39583 -NW_017366533.1 ALN gene 1001 3313 1569 + . ID=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN mRNA 1001 3313 1569 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 -NW_017366533.1 ALN cds 1001 1293 93 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 99 152 + +NW_017366533.1 ALN gene 908 3313 1336 + . ID=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN mRNA 908 3313 1336 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1 +NW_017366533.1 ALN cds 908 1293 -48 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 101 152 + NW_017366533.1 ALN cds 1403 1551 203 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 + NW_017366533.1 ALN cds 1659 1802 187 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 + NW_017366533.1 ALN cds 2061 2214 199 + 0 ID=cds1_00004;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 251 301 + NW_017366533.1 ALN cds 2487 2701 307 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 + NW_017366533.1 ALN cds 2783 3313 609 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 + -NW_017366533.1 ALN gene 5314 8701 1518 - . ID=gene00002;Name=NW_017366533.1_2 -NW_017366533.1 ALN mRNA 5314 8701 1518 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN gene 5314 8701 1427 - . ID=gene00002;Name=NW_017366533.1_2 +NW_017366533.1 ALN mRNA 5314 8701 1427 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2 NW_017366533.1 ALN cds 8528 8701 268 - 0 ID=cds2_00001;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 17 74 + NW_017366533.1 ALN cds 7566 7706 181 - 0 ID=cds2_00002;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 75 121 + NW_017366533.1 ALN cds 7219 7357 238 - 0 ID=cds2_00003;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 122 167 + NW_017366533.1 ALN cds 6929 7041 176 - 2 ID=cds2_00004;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 168 205 + -NW_017366533.1 ALN cds 6595 6828 386 - 0 ID=cds2_00005;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 206 284 + +NW_017366533.1 ALN cds 6595 6828 385 - 0 ID=cds2_00005;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 206 284 + NW_017366533.1 ALN cds 6288 6394 171 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 + NW_017366533.1 ALN cds 5314 5407 170 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 + -NW_017366533.1 ALN gene 10702 20056 1109 + . ID=gene00003;Name=NW_017366533.1_3 -NW_017366533.1 ALN mRNA 10702 20056 1109 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN gene 10702 20056 1034 + . ID=gene00003;Name=NW_017366533.1_3 +NW_017366533.1 ALN mRNA 10702 20056 1034 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3 NW_017366533.1 ALN cds 10702 10827 207 + 0 ID=cds3_00001;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 31 72 + NW_017366533.1 ALN cds 15802 15903 228 + 0 ID=cds3_00002;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 73 106 + NW_017366533.1 ALN cds 17604 17706 204 + 0 ID=cds3_00003;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 107 140 + -NW_017366533.1 ALN cds 17792 17881 187 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + +NW_017366533.1 ALN cds 17792 17881 186 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 + NW_017366533.1 ALN cds 18376 18542 305 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 + NW_017366533.1 ALN cds 20021 20056 70 + 0 ID=cds3_00006;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 227 238 + -NW_017366533.1 ALN gene 22057 32752 5799 + . ID=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN mRNA 22057 32752 5799 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 -NW_017366533.1 ALN cds 22057 22827 844 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 60 308 + +NW_017366533.1 ALN gene 22041 32752 5582 + . ID=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN mRNA 22041 32752 5582 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4 +NW_017366533.1 ALN cds 22041 22827 964 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 53 308 + NW_017366533.1 ALN cds 23837 24082 261 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 + NW_017366533.1 ALN cds 24229 24392 271 + 2 ID=cds4_00003;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 388 442 + NW_017366533.1 ALN cds 24476 24637 281 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 + @@ -39,18 +39,17 @@ NW_017366533.1 ALN cds 27607 27761 266 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 + NW_017366533.1 ALN cds 28374 28508 264 + 0 ID=cds4_00011;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 786 830 + NW_017366533.1 ALN cds 28614 28808 349 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 + -NW_017366533.1 ALN cds 29603 29785 319 + 0 ID=cds4_00013;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 896 956 + -NW_017366533.1 ALN cds 29869 30052 272 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1020 + -NW_017366533.1 ALN cds 30433 30452 10 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1021 1028 + -NW_017366533.1 ALN cds 30555 30561 32 + 0 ID=cds4_00016;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1029 1030 + -NW_017366533.1 ALN cds 30812 30931 228 + 2 ID=cds4_00017;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1031 1070 + -NW_017366533.1 ALN cds 31017 31159 246 + 2 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1071 1118 + -NW_017366533.1 ALN cds 31243 31446 347 + 0 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1119 1186 + -NW_017366533.1 ALN cds 31534 31651 209 + 0 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + -NW_017366533.1 ALN cds 32253 32355 193 + 2 ID=cds4_00021;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + -NW_017366533.1 ALN cds 32488 32752 322 + 1 ID=cds4_00022;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + -NW_017366533.1 ALN gene 34753 39583 2632 + . ID=gene00005;Name=NW_017366533.1_5 -NW_017366533.1 ALN mRNA 34753 39583 2632 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN cds 29603 29785 318 + 0 ID=cds4_00013;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 896 956 + +NW_017366533.1 ALN cds 29869 30052 261 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1025 + +NW_017366533.1 ALN cds 30744 30758 27 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1026 1030 + +NW_017366533.1 ALN cds 30812 30931 223 + 2 ID=cds4_00016;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1031 1070 + +NW_017366533.1 ALN cds 31017 31159 246 + 2 ID=cds4_00017;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1071 1118 + +NW_017366533.1 ALN cds 31243 31446 347 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1119 1186 + +NW_017366533.1 ALN cds 31534 31651 209 + 0 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 + +NW_017366533.1 ALN cds 32253 32355 193 + 2 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 + +NW_017366533.1 ALN cds 32488 32752 322 + 1 ID=cds4_00021;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 + +NW_017366533.1 ALN gene 34753 39583 2466 + . ID=gene00005;Name=NW_017366533.1_5 +NW_017366533.1 ALN mRNA 34753 39583 2466 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5 NW_017366533.1 ALN cds 34753 34872 273 + 0 ID=cds5_00001;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 1 40 + NW_017366533.1 ALN cds 35722 35874 297 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 + NW_017366533.1 ALN cds 35986 36078 203 + 0 ID=cds5_00003;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 92 122 + @@ -58,7 +57,7 @@ NW_017366533.1 ALN cds 36706 36831 248 + 0 ID=cds5_00005;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 145 186 + NW_017366533.1 ALN cds 37166 37247 169 + 0 ID=cds5_00006;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 187 213 + NW_017366533.1 ALN cds 37677 37768 187 + 2 ID=cds5_00007;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 214 244 + -NW_017366533.1 ALN cds 37884 38017 271 + 0 ID=cds5_00008;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 245 289 + +NW_017366533.1 ALN cds 37884 38017 270 + 0 ID=cds5_00008;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 245 289 + NW_017366533.1 ALN cds 38109 38214 210 + 1 ID=cds5_00009;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 290 324 + NW_017366533.1 ALN cds 38546 38704 354 + 0 ID=cds5_00010;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 325 377 + NW_017366533.1 ALN cds 38803 38876 164 + 0 ID=cds5_00011;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 378 402 +