Mercurial > repos > sanbi-uwc > lukasa

annotate test-data/spaln_out.gff3 @ 0:7297f56d2d03 draft

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lukasa 0.0.6
author sanbi-uwc
date Tue, 13 Oct 2020 12:30:39 +0000
parents
children 20c176cd4c3b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
1 ##gff-version 3
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
2 ##sequence-region NW_017366533.1 906 39583
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
3 NW_017366533.1 ALN gene 1001 3313 1509 + . ID=gene00001;Name=NW_017366533.1_1
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
4 NW_017366533.1 ALN mRNA 1001 3313 1509 + . ID=mRNA1_00001;Parent=gene00001;Name=NW_017366533.1_1
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
5 NW_017366533.1 ALN cds 1001 1293 92 + 0 ID=cds1_00001;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 99 152 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
6 NW_017366533.1 ALN cds 1403 1551 206 + 2 ID=cds1_00002;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 153 202 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
7 NW_017366533.1 ALN cds 1659 1802 189 + 0 ID=cds1_00003;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 203 250 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
8 NW_017366533.1 ALN cds 2061 2214 200 + 0 ID=cds1_00004;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 251 301 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
9 NW_017366533.1 ALN cds 2487 2701 312 + 2 ID=cds1_00005;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 302 374 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
10 NW_017366533.1 ALN cds 2783 3313 610 + 0 ID=cds1_00006;Parent=mRNA1_00001;Name=NW_017366533.1_1;Target=XP_008319618.1 375 549 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
11 NW_017366533.1 ALN gene 5314 8701 1447 - . ID=gene00002;Name=NW_017366533.1_2
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
12 NW_017366533.1 ALN mRNA 5314 8701 1447 - . ID=mRNA2_00001;Parent=gene00002;Name=NW_017366533.1_2
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
13 NW_017366533.1 ALN cds 8528 8701 267 - 0 ID=cds2_00001;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 17 74 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
14 NW_017366533.1 ALN cds 7566 7706 184 - 0 ID=cds2_00002;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 75 121 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
15 NW_017366533.1 ALN cds 7219 7357 242 - 0 ID=cds2_00003;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 122 167 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
16 NW_017366533.1 ALN cds 6929 7041 177 - 2 ID=cds2_00004;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 168 205 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
17 NW_017366533.1 ALN cds 6595 6828 385 - 0 ID=cds2_00005;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 206 284 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
18 NW_017366533.1 ALN cds 6288 6394 177 - 0 ID=cds2_00006;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 285 320 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
19 NW_017366533.1 ALN cds 5314 5407 172 - 1 ID=cds2_00007;Parent=mRNA2_00001;Name=NW_017366533.1_2;Target=XP_008322079.1 321 351 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
20 NW_017366533.1 ALN gene 10702 20056 1065 + . ID=gene00003;Name=NW_017366533.1_3
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
21 NW_017366533.1 ALN mRNA 10702 20056 1065 + . ID=mRNA3_00001;Parent=gene00003;Name=NW_017366533.1_3
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
22 NW_017366533.1 ALN cds 10702 10827 208 + 0 ID=cds3_00001;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 31 72 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
23 NW_017366533.1 ALN cds 15802 15903 235 + 0 ID=cds3_00002;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 73 106 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
24 NW_017366533.1 ALN cds 17604 17706 205 + 0 ID=cds3_00003;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 107 140 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
25 NW_017366533.1 ALN cds 17792 17881 192 + 2 ID=cds3_00004;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 141 170 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
26 NW_017366533.1 ALN cds 18376 18542 310 + 2 ID=cds3_00005;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 171 226 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
27 NW_017366533.1 ALN cds 20021 20056 71 + 0 ID=cds3_00006;Parent=mRNA3_00001;Name=NW_017366533.1_3;Target=XP_008322769.1 227 238 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
28 NW_017366533.1 ALN gene 22057 32752 5551 + . ID=gene00004;Name=NW_017366533.1_4
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
29 NW_017366533.1 ALN mRNA 22057 32752 5551 + . ID=mRNA4_00001;Parent=gene00004;Name=NW_017366533.1_4
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
30 NW_017366533.1 ALN cds 22057 22827 845 + 0 ID=cds4_00001;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 60 308 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
31 NW_017366533.1 ALN cds 23837 24082 263 + 2 ID=cds4_00002;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 309 387 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
32 NW_017366533.1 ALN cds 24229 24392 270 + 2 ID=cds4_00003;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 388 442 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
33 NW_017366533.1 ALN cds 24476 24637 279 + 0 ID=cds4_00004;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 443 496 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
34 NW_017366533.1 ALN cds 24718 24791 127 + 0 ID=cds4_00005;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 497 521 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
35 NW_017366533.1 ALN cds 25910 26093 358 + 1 ID=cds4_00006;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 522 582 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
36 NW_017366533.1 ALN cds 26306 26539 433 + 0 ID=cds4_00007;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 583 660 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
37 NW_017366533.1 ALN cds 27205 27296 152 + 0 ID=cds4_00008;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 661 691 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
38 NW_017366533.1 ALN cds 27383 27510 235 + 1 ID=cds4_00009;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 692 733 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
39 NW_017366533.1 ALN cds 27607 27761 271 + 2 ID=cds4_00010;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 734 785 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
40 NW_017366533.1 ALN cds 28374 28508 266 + 0 ID=cds4_00011;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 786 830 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
41 NW_017366533.1 ALN cds 28614 28808 351 + 0 ID=cds4_00012;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 831 895 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
42 NW_017366533.1 ALN cds 29603 29785 322 + 0 ID=cds4_00013;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 896 956 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
43 NW_017366533.1 ALN cds 29869 30052 278 + 0 ID=cds4_00014;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 957 1020 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
44 NW_017366533.1 ALN cds 30791 30931 224 + 2 ID=cds4_00015;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1021 1070 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
45 NW_017366533.1 ALN cds 31017 31159 249 + 2 ID=cds4_00016;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1071 1118 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
46 NW_017366533.1 ALN cds 31243 31446 346 + 0 ID=cds4_00017;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1119 1186 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
47 NW_017366533.1 ALN cds 31534 31651 207 + 0 ID=cds4_00018;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1187 1225 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
48 NW_017366533.1 ALN cds 32253 32355 196 + 2 ID=cds4_00019;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1226 1260 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
49 NW_017366533.1 ALN cds 32488 32752 323 + 1 ID=cds4_00020;Parent=mRNA4_00001;Name=NW_017366533.1_4;Target=XP_008322771.1 1261 1348 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
50 NW_017366533.1 ALN gene 34753 39583 2503 + . ID=gene00005;Name=NW_017366533.1_5
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
51 NW_017366533.1 ALN mRNA 34753 39583 2503 + . ID=mRNA5_00001;Parent=gene00005;Name=NW_017366533.1_5
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
52 NW_017366533.1 ALN cds 34753 34872 272 + 0 ID=cds5_00001;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 1 40 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
53 NW_017366533.1 ALN cds 35722 35874 296 + 0 ID=cds5_00002;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 41 91 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
54 NW_017366533.1 ALN cds 35986 36078 203 + 0 ID=cds5_00003;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 92 122 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
55 NW_017366533.1 ALN cds 36220 36285 147 + 0 ID=cds5_00004;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 123 144 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
56 NW_017366533.1 ALN cds 36706 36831 249 + 0 ID=cds5_00005;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 145 186 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
57 NW_017366533.1 ALN cds 37166 37247 172 + 0 ID=cds5_00006;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 187 213 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
58 NW_017366533.1 ALN cds 37677 37768 188 + 2 ID=cds5_00007;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 214 244 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
59 NW_017366533.1 ALN cds 37884 38017 272 + 0 ID=cds5_00008;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 245 289 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
60 NW_017366533.1 ALN cds 38109 38214 215 + 1 ID=cds5_00009;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 290 324 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
61 NW_017366533.1 ALN cds 38546 38704 359 + 0 ID=cds5_00010;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 325 377 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
62 NW_017366533.1 ALN cds 38803 38876 166 + 0 ID=cds5_00011;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 378 402 +
7297f56d2d03 lukasa 0.0.6
sanbi-uwc
parents:
diff changeset
63 NW_017366533.1 ALN cds 39463 39583 241 + 1 ID=cds5_00012;Parent=mRNA5_00001;Name=NW_017366533.1_5;Target=XP_008322772.1 403 442 +