Mercurial > repos > sanbi-uwc > confil
changeset 7:96c8c5cada47 draft
planemo upload for repository https://github.com/COMBAT-TB/confil commit 18a08ba3ab742326c8f60a8566c49652e1b8f4c7
| author | sanbi-uwc |
|---|---|
| date | Thu, 07 Mar 2019 07:12:34 -0500 |
| parents | 2b90d0574ea5 |
| children | 3892ea8ad1ad |
| files | conda/conda_upload.sh conda/meta.yaml confil.egg-info/PKG-INFO confil.egg-info/SOURCES.txt confil.xml confil/__init__.pyc confil/confil.pyc confil/kraken.pyc confil/report.pyc |
| diffstat | 9 files changed, 24 insertions(+), 21 deletions(-) [+] |
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--- a/conda/conda_upload.sh Tue Mar 05 03:49:38 2019 -0500 +++ b/conda/conda_upload.sh Thu Mar 07 07:12:34 2019 -0500 @@ -8,7 +8,6 @@ conda config --set anaconda_upload no DEV='dev' DATE=`date +%Y%m%d` -export VERSION=$DEV$DATE export CONDA_BLD_PATH=$HOME/miniconda/conda-bld conda build . anaconda -t $CONDA_UPLOAD_TOKEN upload -u $USER $CONDA_BLD_PATH/$OS/$PKG_NAME-*.tar.bz2 --force
--- a/conda/meta.yaml Tue Mar 05 03:49:38 2019 -0500 +++ b/conda/meta.yaml Thu Mar 07 07:12:34 2019 -0500 @@ -1,16 +1,17 @@ +{% set version = "0.1.3" %} +{% set sha256 = "8ae72d4c136edff4e755462f6c57c903edb8479ea68d6f0ccdb38f6c56e42d04" %} + package: name: confil - version: {{ environ['VERSION'] }} + version: {{ version }} source: - fn: confil-0.1.3.tar.gz - url: https://github.com/COMBAT-TB/confil/archive/0.1.3.tar.gz + url: https://github.com/COMBAT-TB/confil/archive/{{ version }}.tar.gz + sha256: {{ sha256 }} build: - script_env: - - VERSION - - CONDA_BLD_PATH - number: 0 + script: "{{ PYTHON }} -m pip install . --no-deps -vv" + number: 1 requirements: build: @@ -19,7 +20,14 @@ run: - python - click - + - kraken2 + +test: + commands: + - confil |& grep confil + imports: + - confil + about: home: https://github.com/COMBAT-TB/confil license_file: LICENSE
--- a/confil.egg-info/PKG-INFO Tue Mar 05 03:49:38 2019 -0500 +++ b/confil.egg-info/PKG-INFO Thu Mar 07 07:12:34 2019 -0500 @@ -1,12 +1,9 @@ -Metadata-Version: 1.0 +Metadata-Version: 2.1 Name: confil -Version: 0.1.2.dev20190304 +Version: 0.1.3.dev20190307 Summary: Contamination filter Home-page: https://github.com/COMBAT-TB/confil -Author: UNKNOWN -Author-email: UNKNOWN License: UNKNOWN -Description-Content-Type: text/markdown Description: # confil [](https://travis-ci.org/COMBAT-TB/confil) @@ -36,3 +33,4 @@ Keywords: contamination,filter Platform: UNKNOWN +Description-Content-Type: text/markdown
--- a/confil.egg-info/SOURCES.txt Tue Mar 05 03:49:38 2019 -0500 +++ b/confil.egg-info/SOURCES.txt Thu Mar 07 07:12:34 2019 -0500 @@ -3,13 +3,10 @@ setup.py confil/__init__.py confil/confil.py -confil/kraken.py -confil/report.py confil.egg-info/PKG-INFO confil.egg-info/SOURCES.txt confil.egg-info/dependency_links.txt confil.egg-info/entry_points.txt confil.egg-info/requires.txt confil.egg-info/top_level.txt -test/test_report.py test/test_runner.py \ No newline at end of file
--- a/confil.xml Tue Mar 05 03:49:38 2019 -0500 +++ b/confil.xml Thu Mar 07 07:12:34 2019 -0500 @@ -1,8 +1,9 @@ -<tool id="confil" name="Contamination Filter (confil)" version="0.1.3"> +<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy0"> + <macros> + <token name="@VERSION@">0.1.3</token> + </macros> <requirements> - <requirement type="package" version="7.0">click</requirement> - <requirement type="package" version="2.0.7_beta">kraken2</requirement> - <requirement type="package" version="dev20190305">confil</requirement> + <requirement type="package" version="@VERSION@">confil</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #set $input_type = $input_type_conditional.input_type