# HG changeset patch
# User sanbi-uwc
# Date 1551960754 18000
# Node ID 96c8c5cada4786f4e56a58c68a19484ef61ba5cf
# Parent  2b90d0574ea5905ed4b4af26e8fbbf18505d456e
planemo upload for repository https://github.com/COMBAT-TB/confil commit 18a08ba3ab742326c8f60a8566c49652e1b8f4c7

diff -r 2b90d0574ea5 -r 96c8c5cada47 conda/conda_upload.sh
--- a/conda/conda_upload.sh	Tue Mar 05 03:49:38 2019 -0500
+++ b/conda/conda_upload.sh	Thu Mar 07 07:12:34 2019 -0500
@@ -8,7 +8,6 @@
 conda config --set anaconda_upload no
 DEV='dev'
 DATE=`date +%Y%m%d`
-export VERSION=$DEV$DATE
 export CONDA_BLD_PATH=$HOME/miniconda/conda-bld
 conda build .
 anaconda -t $CONDA_UPLOAD_TOKEN upload -u $USER $CONDA_BLD_PATH/$OS/$PKG_NAME-*.tar.bz2 --force
diff -r 2b90d0574ea5 -r 96c8c5cada47 conda/meta.yaml
--- a/conda/meta.yaml	Tue Mar 05 03:49:38 2019 -0500
+++ b/conda/meta.yaml	Thu Mar 07 07:12:34 2019 -0500
@@ -1,16 +1,17 @@
+{% set version = "0.1.3" %}
+{% set sha256 = "8ae72d4c136edff4e755462f6c57c903edb8479ea68d6f0ccdb38f6c56e42d04" %}
+
 package:
   name: confil
-  version: {{ environ['VERSION'] }}
+  version: {{ version }}
 
 source:
-  fn: confil-0.1.3.tar.gz
-  url: https://github.com/COMBAT-TB/confil/archive/0.1.3.tar.gz
+  url: https://github.com/COMBAT-TB/confil/archive/{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  script_env:
-    - VERSION
-    - CONDA_BLD_PATH
-  number: 0
+  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
+  number: 1
 
 requirements:
   build:
@@ -19,7 +20,14 @@
   run:
     - python
     - click
-    
+    - kraken2
+
+test:
+  commands:
+    - confil |& grep confil
+  imports:
+    - confil
+
 about:
   home: https://github.com/COMBAT-TB/confil
   license_file: LICENSE
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil.egg-info/PKG-INFO
--- a/confil.egg-info/PKG-INFO	Tue Mar 05 03:49:38 2019 -0500
+++ b/confil.egg-info/PKG-INFO	Thu Mar 07 07:12:34 2019 -0500
@@ -1,12 +1,9 @@
-Metadata-Version: 1.0
+Metadata-Version: 2.1
 Name: confil
-Version: 0.1.2.dev20190304
+Version: 0.1.3.dev20190307
 Summary: Contamination filter
 Home-page: https://github.com/COMBAT-TB/confil
-Author: UNKNOWN
-Author-email: UNKNOWN
 License: UNKNOWN
-Description-Content-Type: text/markdown
 Description: # confil
         
         [![Build Status](https://travis-ci.org/COMBAT-TB/confil.svg?branch=master)](https://travis-ci.org/COMBAT-TB/confil)
@@ -36,3 +33,4 @@
         
 Keywords: contamination,filter
 Platform: UNKNOWN
+Description-Content-Type: text/markdown
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil.egg-info/SOURCES.txt
--- a/confil.egg-info/SOURCES.txt	Tue Mar 05 03:49:38 2019 -0500
+++ b/confil.egg-info/SOURCES.txt	Thu Mar 07 07:12:34 2019 -0500
@@ -3,13 +3,10 @@
 setup.py
 confil/__init__.py
 confil/confil.py
-confil/kraken.py
-confil/report.py
 confil.egg-info/PKG-INFO
 confil.egg-info/SOURCES.txt
 confil.egg-info/dependency_links.txt
 confil.egg-info/entry_points.txt
 confil.egg-info/requires.txt
 confil.egg-info/top_level.txt
-test/test_report.py
 test/test_runner.py
\ No newline at end of file
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil.xml
--- a/confil.xml	Tue Mar 05 03:49:38 2019 -0500
+++ b/confil.xml	Thu Mar 07 07:12:34 2019 -0500
@@ -1,8 +1,9 @@
-<tool id="confil" name="Contamination Filter (confil)" version="0.1.3">
+<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy0">
+    <macros>
+	<token name="@VERSION@">0.1.3</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="7.0">click</requirement>
-        <requirement type="package" version="2.0.7_beta">kraken2</requirement>
-        <requirement type="package" version="dev20190305">confil</requirement>
+        <requirement type="package" version="@VERSION@">confil</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         #set $input_type = $input_type_conditional.input_type
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil/__init__.pyc
Binary file confil/__init__.pyc has changed
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil/confil.pyc
Binary file confil/confil.pyc has changed
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil/kraken.pyc
Binary file confil/kraken.pyc has changed
diff -r 2b90d0574ea5 -r 96c8c5cada47 confil/report.pyc
Binary file confil/report.pyc has changed