changeset 40:7338f1107f5f draft

planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit cd22b28e722e05ba3d63c2f3b34e6bfa4a91b2a3
author sanbi-uwc
date Tue, 14 Jun 2016 07:15:56 -0400
parents 2a9a2575c8a4
children 4cc08d9558cc
files build_ctb_gene.py build_ctb_gene.xml repository_dependencies.xml
diffstat 3 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/build_ctb_gene.py	Wed Jun 01 07:48:50 2016 -0400
+++ b/build_ctb_gene.py	Tue Jun 14 07:15:56 2016 -0400
@@ -43,7 +43,7 @@
         self.docker_instance_name = "build_ctb_gene_" + str(random.randrange(0, 1000, 2))
 
     def build_ctb_gene(self):
-        cmdline_str = "build_ctb_gene goterms {}".format(self.args.input_file)
+        cmdline_str = "goget goterms {}".format(self.args.input_file)
         cmdline_str = self.newSplit(cmdline_str)
         try:
             check_call(cmdline_str)
--- a/build_ctb_gene.xml	Wed Jun 01 07:48:50 2016 -0400
+++ b/build_ctb_gene.xml	Tue Jun 14 07:15:56 2016 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="utf-8" ?>
-<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.0.3">
+<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.1.0">
     <requirements>
-       <requirement type="package" version="0.1">build_ctb_gene_neo4j</requirement>
+       <requirement type="package" version="0.0.1">goget</requirement>
     </requirements>
     <description> build_ctb_gene is the tool used to extract data about genes using locus_tags </description>
     <stdio>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Tue Jun 14 07:15:56 2016 -0400
@@ -0,0 +1,4 @@
+<?xml version="1.0"?>
+<repositories description="This requires the Neo4J store datatypes definitions">
+    <repository changeset_revision="45b969e6ff9a" name="neo4j_datatypes" owner="sanbi-uwc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+</repositories>