Mercurial > repos > sanbi-uwc > build_ctb_gene
changeset 40:7338f1107f5f draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit cd22b28e722e05ba3d63c2f3b34e6bfa4a91b2a3
| author | sanbi-uwc |
|---|---|
| date | Tue, 14 Jun 2016 07:15:56 -0400 |
| parents | 2a9a2575c8a4 |
| children | 4cc08d9558cc |
| files | build_ctb_gene.py build_ctb_gene.xml repository_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/build_ctb_gene.py Wed Jun 01 07:48:50 2016 -0400 +++ b/build_ctb_gene.py Tue Jun 14 07:15:56 2016 -0400 @@ -43,7 +43,7 @@ self.docker_instance_name = "build_ctb_gene_" + str(random.randrange(0, 1000, 2)) def build_ctb_gene(self): - cmdline_str = "build_ctb_gene goterms {}".format(self.args.input_file) + cmdline_str = "goget goterms {}".format(self.args.input_file) cmdline_str = self.newSplit(cmdline_str) try: check_call(cmdline_str)
--- a/build_ctb_gene.xml Wed Jun 01 07:48:50 2016 -0400 +++ b/build_ctb_gene.xml Tue Jun 14 07:15:56 2016 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0" encoding="utf-8" ?> -<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.0.3"> +<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.1.0"> <requirements> - <requirement type="package" version="0.1">build_ctb_gene_neo4j</requirement> + <requirement type="package" version="0.0.1">goget</requirement> </requirements> <description> build_ctb_gene is the tool used to extract data about genes using locus_tags </description> <stdio>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Tue Jun 14 07:15:56 2016 -0400 @@ -0,0 +1,4 @@ +<?xml version="1.0"?> +<repositories description="This requires the Neo4J store datatypes definitions"> + <repository changeset_revision="45b969e6ff9a" name="neo4j_datatypes" owner="sanbi-uwc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> +</repositories>