Mercurial > repos > sanbi-uwc > build_ctb_gene
changeset 41:4cc08d9558cc draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 7215a100b21673bd9ad3f1c2bca454984d4a5e54
| author | sanbi-uwc |
|---|---|
| date | Tue, 14 Jun 2016 07:53:59 -0400 |
| parents | 7338f1107f5f |
| children | 7d09e08d7580 |
| files | build_ctb_gene.py build_ctb_gene.xml |
| diffstat | 2 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/build_ctb_gene.py Tue Jun 14 07:15:56 2016 -0400 +++ b/build_ctb_gene.py Tue Jun 14 07:53:59 2016 -0400 @@ -96,8 +96,12 @@ except os.error as e: print("Error creating mount point {mount_point}: {error}".format(mount_point=self.mount_point, error=e.strerror)) - cmd_str = "docker run -d -P -v {}:/data -e NEO4J_AUTH=none --name {} thoba/neo4j_galaxy_ie".format( - self.mount_point, self.docker_instance_name) + cmd_str = "docker run --rm -P -v {mount_point}:/data -e NEO4J_UID={uid} -e NEO4J_GID={gid} -e NEO4J_AUTH=none --name {name} thoba/neo4j_galaxy_ie".format( + mount_point=self.mount_point, + name=self.docker_instance_name, + uid=os.getuid(), + gid=os.getgid(), + ) cmd = self.newSplit(cmd_str) try: check_call(cmd)
--- a/build_ctb_gene.xml Tue Jun 14 07:15:56 2016 -0400 +++ b/build_ctb_gene.xml Tue Jun 14 07:53:59 2016 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8" ?> -<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.1.0"> +<tool id="build_ctb_gene" name="Build_ctb_gene Tool" version="1.1.1"> <requirements> <requirement type="package" version="0.0.1">goget</requirement> </requirements>