Mercurial > repos > sanbi-uwc > build_ctb_gene
changeset 8:56555326a056 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 333add5fa185ac676c1a09b9b62e4d6c07b3bafa
| author | sanbi-uwc |
|---|---|
| date | Mon, 16 May 2016 05:32:38 -0400 |
| parents | d89a58d00a92 |
| children | 9cc174f0fb9f |
| files | build_ctb_gene.py |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/build_ctb_gene.py Mon May 16 05:28:29 2016 -0400 +++ b/build_ctb_gene.py Mon May 16 05:32:38 2016 -0400 @@ -43,7 +43,7 @@ def main(): parser = argparse.ArgumentParser(description="Generate a BAM file from the Novo Align tool") parser.add_argument('output_file1') - parser.add_argument('--output_dir') + parser.add_argument('--outputdir') parser.add_argument('--input_file') parser.add_argument('--mount_point') parser.add_argument('--username') @@ -58,7 +58,7 @@ except: log.debug("Error exporting the NEO4J db environmental values") - build_ctb_gene(args.output_file1, args.output_dir, args.input_file, args.mount_point) + build_ctb_gene(args.output_file1, args.outputdir, args.input_file, args.mount_point) if __name__ == "__main__": main()