# HG changeset patch
# User sanbi-uwc
# Date 1463391158 14400
# Node ID 56555326a05697c4011d60b8c7e5ab8e6bee45c9
# Parent  d89a58d00a926217362da6f08b8cd5c9092927ba
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 333add5fa185ac676c1a09b9b62e4d6c07b3bafa

diff -r d89a58d00a92 -r 56555326a056 build_ctb_gene.py
--- a/build_ctb_gene.py	Mon May 16 05:28:29 2016 -0400
+++ b/build_ctb_gene.py	Mon May 16 05:32:38 2016 -0400
@@ -43,7 +43,7 @@
 def main():
     parser = argparse.ArgumentParser(description="Generate a BAM file from the Novo Align tool")
     parser.add_argument('output_file1')
-    parser.add_argument('--output_dir')
+    parser.add_argument('--outputdir')
     parser.add_argument('--input_file')
     parser.add_argument('--mount_point')
     parser.add_argument('--username')
@@ -58,7 +58,7 @@
     except:
         log.debug("Error exporting the NEO4J db environmental values")
 
-    build_ctb_gene(args.output_file1, args.output_dir, args.input_file, args.mount_point)
+    build_ctb_gene(args.output_file1, args.outputdir, args.input_file, args.mount_point)
 
 
 if __name__ == "__main__": main()