Mercurial > repos > sanbi-uwc > build_ctb_gene
changeset 28:4864d5866418 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 4e7d0d81a4ac02a0fcc5bb81d61559476df1086c
| author | sanbi-uwc |
|---|---|
| date | Mon, 23 May 2016 03:36:17 -0400 |
| parents | 3995dfb6b497 |
| children | b8ecf55d8987 |
| files | build_ctb_gene.py build_ctb_gene.xml |
| diffstat | 2 files changed, 0 insertions(+), 14 deletions(-) [+] |
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--- a/build_ctb_gene.py Sun May 22 15:34:49 2016 -0400 +++ b/build_ctb_gene.py Mon May 23 03:36:17 2016 -0400 @@ -8,7 +8,6 @@ import shutil import datetime import time -import random from subprocess import check_call, check_output, CalledProcessError import logging @@ -99,14 +98,8 @@ def main(): parser = argparse.ArgumentParser(description="Tool used to extract data about genes using locus_tags") - # parser.add_argument('--outputfile') parser.add_argument('--outputdir') parser.add_argument('--input_file') - # parser.add_argument('--mount_point') - # parser.add_argument('--username') - # parser.add_argument('--password') - # parser.add_argument('--url') - # parser.add_argument('--port') args = parser.parse_args() ctb_gene_runner = BuildCtbRunner(args)
--- a/build_ctb_gene.xml Sun May 22 15:34:49 2016 -0400 +++ b/build_ctb_gene.xml Mon May 23 03:36:17 2016 -0400 @@ -13,13 +13,6 @@ </command> <inputs> <param name="input_file" type="data" format="gff" label="Choose the GFF file" help="Specify the GFF file" optional="False" /> - <!--<param type="text" name="neo4j_data_mount_point" value="" label="Neo4j data mount point" place-holder="/mnt/neo4j/data/lib" optional="False" /> --> - <!--<section name="db_settings" title="Neo4j Backend Database Settings" expanded="True"> - <param type="text" name="neo4j_db_url" value="" label="Neo4j database URL" optional="False" /> - <param type="text" name="neo4j_db_port" value="" label="Neo4j database port" optional="False" /> - <param type="text" name="neo4j_db_username" value="" label="Neo4j database username" optional="False" /> - <param type="text" name="neo4j_db_password" value="" label="Neo4j database password" optional="False" /> - </section>--> </inputs> <outputs> <data format="neostore" name="outputFile1"/>