Mercurial > repos > sanbi-uwc > build_ctb_gene

changeset 20:06bd61e33a18 draft

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planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit eadb75a0a60406ee628a236da3e48456d330d840
author sanbi-uwc
date Thu, 19 May 2016 08:21:43 -0400
parents d60316b849a1
children 04f49a2f5ec9
files build_ctb_gene.py
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/build_ctb_gene.py	Thu May 19 07:58:53 2016 -0400
+++ b/build_ctb_gene.py	Thu May 19 08:21:43 2016 -0400
@@ -53,7 +53,10 @@
         # retrieve neo4j files to the working gx directory
         result_file = glob.glob(self.args.mount_point + '/*')
         for file_name in result_file:
-            shutil.copytree(file_name, self.args.outputdir)
+            if os.path.isfile(file_name):
+                shutil.copy(file_name, self.args.outputdir)
+            else:
+                shutil.copytree(file_name, self.args.outputdir)
 
 
 def main():