Mercurial > repos > sanbi-uwc > build_ctb_explorer
changeset 2:4af7d0144c82 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/build_ctb_explorer commit 136433086ddfcfb005e2ee476e93f053eaa8b3a1
| author | sanbi-uwc |
|---|---|
| date | Fri, 10 Jun 2016 06:05:02 -0400 |
| parents | 0819302402d3 |
| children | 3212320e3c19 |
| files | build_ctb_explorer.py build_ctb_explorer.xml |
| diffstat | 2 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/build_ctb_explorer.py Fri Jun 10 05:01:56 2016 -0400 +++ b/build_ctb_explorer.py Fri Jun 10 06:05:02 2016 -0400 @@ -22,7 +22,7 @@ Copy the datasets file to the news dataset cbt_browser :param dir_name: the target output directory for the ctb_explorer dataset :param input_dir: the input files - :param dt_type: the type of input dataset (neo4jdb, jbrowse - default to None) + :param dt_type: the type of input dataset (neo4jdb, jbrowser - default to None) :return: boolean """ dt_loc = input_dir.rpartition('/')[2].replace(".dat", "_files")
--- a/build_ctb_explorer.xml Fri Jun 10 05:01:56 2016 -0400 +++ b/build_ctb_explorer.xml Fri Jun 10 06:05:02 2016 -0400 @@ -6,8 +6,7 @@ <exit_code range="1:" /> </stdio> <command interpreter="python"> - build_ctb_explorer.py --output_neo4jdb "${os.path.join($outputFile1.files_path,'neo4jdb')}"\ - --output_jbrowser "${os.path.join($outputFile1.files_path,'jbrowser')}" --input_neo4jdb "${input_neo4jdb}" --input_jbrowser "${input_jbrowser}" > ${outputFile1} + build_ctb_explorer.py --output_neo4jdb "${os.path.join($outputFile1.files_path,'neo4jdb')}" --output_jbrowser "${os.path.join($outputFile1.files_path,'jbrowser')}" --input_neo4jdb "${input_neo4jdb}" --input_jbrowser "${input_jbrowser}" > ${outputFile1} </command> <inputs> <param name="input_neo4jdb" type="data" format="neostore" label="Choose the neo4jdb dataset" help="Specify the neo4jdb file" optional="False" />