Mercurial > repos > sanbi-uwc > build_ctb_explorer
changeset 3:3212320e3c19 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/build_ctb_explorer commit 4137cd3016ef2d6e7d8f56b4ff294884aa097c92
| author | sanbi-uwc |
|---|---|
| date | Fri, 10 Jun 2016 08:50:09 -0400 |
| parents | 4af7d0144c82 |
| children | 0d1da3ae9d3d |
| files | build_ctb_explorer.py |
| diffstat | 1 files changed, 24 insertions(+), 3 deletions(-) [+] |
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--- a/build_ctb_explorer.py Fri Jun 10 06:05:02 2016 -0400 +++ b/build_ctb_explorer.py Fri Jun 10 08:50:09 2016 -0400 @@ -35,11 +35,23 @@ return False for file_name in src_files: if os.path.isfile(file_name): - shutil.copy2(file_name, dir_name) + try: + shutil.copy2(file_name, dir_name) + except shutil.Error as e: + log.debug('Error: %s' % e) + # eg. source or destination doesn't exist + except IOError as e: + log.debug('Error: %s' % e.strerror) elif os.path.isdir(file_name): # create the parent dir before copytree - os.chdir(dir_name) - shutil.copytree(file_name, file_name.rsplit('/', 1)[-1]) + try: + os.chdir(dir_name) + shutil.copytree(file_name, file_name.rsplit('/', 1)[-1]) + except shutil.Error as e: + log.debug('Error: %s' % e) + # eg. source or destination doesn't exist + except IOError as e: + log.debug('Error: %s' % e.strerror) return True @@ -61,6 +73,15 @@ """ if copy_output_file_to_dataset(self.output_neo4jdb, self.input_neo4jdb, dt_type="neo4jdb") and \ copy_output_file_to_dataset(self.output_jbrowser, self.input_jbrowser, dt_type="jbrowser"): + + """Copy the jbrowser input data file to the outputdir @TODO: investigate altenatives""" + try: + shutil.copy2(self.input_jbrowser, self.output_jbrowser) + except shutil.Error as e: + log.debug('Error: %s' % e) + # eg. source or destination doesn't exist + except IOError as e: + log.debug('Error: %s' % e.strerror) print("CTB Report run time: %s" % str(datetime.date.today())) print("Neo4jDB - Input: %s" % str(self.args.input_neo4jdb)) print("JBrowser - Input: %s" % str(self.args.input_jbrowser))