Mercurial > repos > sanbi-uwc > assess_poliovirus_alignment
changeset 4:1897677e107c draft
planemo upload for repository https://github.com/pvanheus/polio_report commit a99e10fec2fac5aae70974c977eb3b362a1a8429-dirty
| author | sanbi-uwc |
|---|---|
| date | Fri, 22 Jul 2022 09:55:46 +0000 |
| parents | 52c2d2b7da6c |
| children | 0e556a3f85d6 |
| files | assess_alignment.py assess_poliovirus_alignment.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/assess_alignment.py Fri Jul 22 09:13:45 2022 +0000 +++ b/assess_alignment.py Fri Jul 22 09:55:46 2022 +0000 @@ -106,7 +106,7 @@ if state == "M": # for mismatch store [pos_in_genome, pos_in_vp1, reference_base, sequenced_base] mismatch_list.append( - [i, i - offset + 1, reference["align"][i], mismatch_bases[i]] + [i + 1, i - offset + 1, reference["align"][i], mismatch_bases[i]] ) return [conflicts, matches, mismatches, mismatch_list]
--- a/assess_poliovirus_alignment.xml Fri Jul 22 09:13:45 2022 +0000 +++ b/assess_poliovirus_alignment.xml Fri Jul 22 09:55:46 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.2.0+galaxy1" profile="21.05"> +<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.3.0+galaxy0" profile="21.05"> <requirements> <requirement type="package" version="3.9">python</requirement> </requirements>