# HG changeset patch
# User sanbi-uwc
# Date 1658483746 0
# Node ID 1897677e107c61283a5a85022188e67497087f71
# Parent  52c2d2b7da6c5ccb3335f2d40b2c42a88538e805
planemo upload for repository https://github.com/pvanheus/polio_report commit a99e10fec2fac5aae70974c977eb3b362a1a8429-dirty

diff -r 52c2d2b7da6c -r 1897677e107c assess_alignment.py
--- a/assess_alignment.py	Fri Jul 22 09:13:45 2022 +0000
+++ b/assess_alignment.py	Fri Jul 22 09:55:46 2022 +0000
@@ -106,7 +106,7 @@
         if state == "M":
             # for mismatch store [pos_in_genome, pos_in_vp1, reference_base, sequenced_base]
             mismatch_list.append(
-                [i, i - offset + 1, reference["align"][i], mismatch_bases[i]]
+                [i + 1, i - offset + 1, reference["align"][i], mismatch_bases[i]]
             )
     return [conflicts, matches, mismatches, mismatch_list]
 
diff -r 52c2d2b7da6c -r 1897677e107c assess_poliovirus_alignment.xml
--- a/assess_poliovirus_alignment.xml	Fri Jul 22 09:13:45 2022 +0000
+++ b/assess_poliovirus_alignment.xml	Fri Jul 22 09:55:46 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.2.0+galaxy1" profile="21.05">
+<tool id="assess_poliovirus_alignment" name="Assess poliovirus alignment" version="0.3.0+galaxy0" profile="21.05">
     <requirements>
         <requirement type="package" version="3.9">python</requirement>
     </requirements>