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author rnateam
date Thu, 22 Oct 2015 09:48:46 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bctools" version="0.1.0">
        <install version="1.0">
            <actions_group>
                <actions>
                    <action target_filename="bctools-0.1.0-alpha1.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz</action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="biopython" version="1.65" />
                        </repository>
                        <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc">
                            <package name="pandas" version="0.16" />
                        </repository> -->
                        <repository changeset_revision="045c4645abdf" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="pandas" version="0.14" />
                        </repository>
                        <!-- <repository name="package_python_2_7_pybedtools_0_6_9" owner="iuc">
                            <package name="pybedtools" version="0.6.9" />
                        </repository> -->
                        <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                            <package name="pybedtools" version="0.6.6" />
                        </repository>
                    </action>
                    <action type="shell_command">
                        python setup.py install --install-scripts $INSTALL_DIR
                    </action>
                    <action type="set_environment">
                        <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
                    </action>
                </actions>
            </actions_group>
        </install>
        <readme>
bctools - Set of tools for handling barcodes in NGS data.
https://github.com/tzk/bctools
        </readme>
    </package>
</tool_dependency>