Mercurial > repos > rnateam > package_bctools_0_1

changeset 1:c9237b21b87f draft default tip

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Uploaded
author rnateam
date Thu, 22 Oct 2015 09:48:46 -0400
parents a286da13c60b
children
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Oct 22 08:04:41 2015 -0400
+++ b/tool_dependencies.xml	Thu Oct 22 09:48:46 2015 -0400
@@ -4,9 +4,9 @@
         <install version="1.0">
             <actions_group>
                 <actions>
-                    <action target_filename="bctools-0.1.0-alpha.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha.tar.gz</action>
+                    <action target_filename="bctools-0.1.0-alpha1.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz</action>
                     <action type="set_environment_for_install">
-                        <repository changeset_revision="f8d72690eeae" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="biopython" version="1.65" />
                         </repository>
                         <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc">
@@ -21,14 +21,11 @@
                         <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="pybedtools" version="0.6.6" />
                         </repository>
-
                     </action>
                     <action type="shell_command">
-                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
-                        python setup.py install --install-lib $INSTALL_DIR/lib/python
+                        python setup.py install --install-scripts $INSTALL_DIR
                     </action>
                     <action type="set_environment">
-                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                         <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
                     </action>
                 </actions>