Mercurial > repos > rnateam > bctools

changeset 53:c112f77f0466 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix dependencies
author rnateam
date Mon, 01 Feb 2016 10:01:38 -0500
parents 5fa4568fc6b2
children 7a05b21c5629
files flexbar.pl macros.xml merge_pcr_duplicates.xml rm_spurious_events.xml
diffstat 4 files changed, 2 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
Binary file flexbar.pl has changed
--- a/macros.xml	Tue Jan 26 04:46:37 2016 -0500
+++ b/macros.xml	Mon Feb 01 10:01:38 2016 -0500
@@ -8,6 +8,8 @@
             <requirement type="package" version="0.6.9">pybedtools</requirement>
             <!-- <requirement type="package" version="2.24">bedtools</requirement> -->
             <requirement type="package" version="0.8.3">pysam</requirement>
+            <requirement type="package" version="4.1.0">gnu_awk</requirement>
+            <requirement type="package" version="8.22">gnu_coreutils</requirement>
         </requirements>
     </xml>
     <xml name="stdio">
--- a/merge_pcr_duplicates.xml	Tue Jan 26 04:46:37 2016 -0500
+++ b/merge_pcr_duplicates.xml	Mon Feb 01 10:01:38 2016 -0500
@@ -1,9 +1,5 @@
 <tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.2.0">
   <description>according to random barcode library.</description>
-  <requirements>
-      <requirement type="package" version="4.1.0">gnu_awk</requirement>
-      <requirement type="package" version="8.22">gnu_coreutils</requirement>
-  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/rm_spurious_events.xml	Tue Jan 26 04:46:37 2016 -0500
+++ b/rm_spurious_events.xml	Mon Feb 01 10:01:38 2016 -0500
@@ -1,9 +1,5 @@
 <tool id="rm_spurious_events.py" name="Remove spurious" version="0.1.0">
   <description>crosslinking events</description>
-  <requirements>
-      <requirement type="package" version="5.18.1">perl</requirement>
-      <requirement type="package" version="8.22">gnu_coreutils</requirement>
-  </requirements>
   <macros>
     <import>macros.xml</import>
   </macros>