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changeset 19:885602df4554 draft

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another try with bedtools dependency
author rnateam
date Mon, 30 Nov 2015 11:43:33 -0500
parents 2c4b134a7fdd
children c17588f80c6f
files macros.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Nov 30 11:32:21 2015 -0500
+++ b/macros.xml	Mon Nov 30 11:43:33 2015 -0500
@@ -3,7 +3,7 @@
         <requirements>
             <requirement type="package" version="1.65">biopython</requirement>
             <requirement type="package" version="0.14">pandas</requirement>
-            <requirement type="package" version="2.18.2">bedtools2</requirement>
+            <requirement type="package" version="2.24">bedtools</requirement>
             <requirement type="package" version="0.6.6">pybedtools</requirement>
         </requirements>
     </xml>
--- a/tool_dependencies.xml	Mon Nov 30 11:32:21 2015 -0500
+++ b/tool_dependencies.xml	Mon Nov 30 11:43:33 2015 -0500
@@ -9,12 +9,9 @@
     <package name="pybedtools" version="0.6.6">
         <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <!-- <package name="bedtools" version="2.19">
-        <repository name="package_bedtools_2_19" owner="iuc"/>
-    </package> -->
-    <requirements>
-        <requirement type="package" version="2.18.2">bedtools2</requirement>
-    </requirements>
+    <package name="package_bedtools_2_24" version="2.24">
+        <repository changeset_revision="e6f4a7398a47" name="package_bedtools_2_24" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="flexbar" version="2.5">
         <repository changeset_revision="45d1b8373762" name="package_flexbar_2_5" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>