Mercurial > repos > rnateam > bctools
changeset 18:2c4b134a7fdd draft
try the bedtools dependendy used by the bedtools galaxy wrappers
| author | rnateam |
|---|---|
| date | Mon, 30 Nov 2015 11:32:21 -0500 |
| parents | cd878c691882 |
| children | 885602df4554 |
| files | macros.xml tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Mon Nov 30 10:55:14 2015 -0500 +++ b/macros.xml Mon Nov 30 11:32:21 2015 -0500 @@ -3,7 +3,7 @@ <requirements> <requirement type="package" version="1.65">biopython</requirement> <requirement type="package" version="0.14">pandas</requirement> - <requirement type="package" version="2.19">bedtools</requirement> + <requirement type="package" version="2.18.2">bedtools2</requirement> <requirement type="package" version="0.6.6">pybedtools</requirement> </requirements> </xml>
--- a/tool_dependencies.xml Mon Nov 30 10:55:14 2015 -0500 +++ b/tool_dependencies.xml Mon Nov 30 11:32:21 2015 -0500 @@ -9,9 +9,12 @@ <package name="pybedtools" version="0.6.6"> <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="bedtools" version="2.19"> - <repository changeset_revision="3ad963111153" name="package_bedtools_2_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> + <!-- <package name="bedtools" version="2.19"> + <repository name="package_bedtools_2_19" owner="iuc"/> + </package> --> + <requirements> + <requirement type="package" version="2.18.2">bedtools2</requirement> + </requirements> <package name="flexbar" version="2.5"> <repository changeset_revision="45d1b8373762" name="package_flexbar_2_5" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package>