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comparison extract_aln_ends.xml @ 6:1bfc5a5de843 draft

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author rnateam
date Wed, 04 Nov 2015 07:18:06 -0500
parents 119fccb59597
children 570a7de9f151
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5:e841de88235c 6:1bfc5a5de843
1 <tool id="extract_aln_ends.py" name="extract_aln_ends.py" version="0.1.0"> 1 <tool id="extract_aln_ends.py" name="Extract alignment ends" version="0.1.0">
2 <description>Extract alignment ends from sam file.</description> 2 <description>from a sam file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
35 35
36 This tool only reports results for alignments that are properly aligned in FR 36 This tool only reports results for alignments that are properly aligned in FR
37 ("forward-reverse") direction. 37 ("forward-reverse") direction.
38 38
39 Input: 39 Input:
40
40 * sam file containing alignments (paired-end sequencing) 41 * sam file containing alignments (paired-end sequencing)
41 42
42 Output: 43 Output:
44
43 * bed6 file containing outer coordinates (sorted by read id) 45 * bed6 file containing outer coordinates (sorted by read id)
44 46
45 Author: Daniel Maticzka 47 Author: Daniel Maticzka
46 Copyright: 2015 48 Copyright: 2015
47 License: Apache 49 License: Apache