view galaxy-tools/biobank/utils/prepare_aligned_seq_dsample_import.xml @ 0:ba6cf6ede027 draft default tip

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<tool id="vl_prepare_aligned_seq_dsample_import" name="VLI.prepare_aligned_seq_dsample_import">
  <description>
    Prepare Tabular file to Import Aligned SeqDatasample
  </description>

  <command interpreter="bash">
    launcher.sh
    --interpreter=python
    --runner=prepare_aligned_seq_dsample_import.py
    --study=${study}
    --label=${label}
    --source=${source}
    --device=${device}
    --genome_reference=${genome_reference}
    --path=${path}
    --sample=${sample}
    --logfile=${log_file}
    --dsample_ofile=${dsample_ofile}
    --dobject_ofile=${dobject_ofile}
  </command>

  <inputs>

    <param name="study" type="text"
	   label="Study" optional="false"/>
    <param name="label" type="text"
	   label="Label" optional="false"/>
    <param name="device" type="text"
	   label="Device" optional="false"/>
    <param name="source" type="text"
	   label="Source" optional="false"/>
    <param name="path" type="text"
	   label="Path" optional="false"/>
    <param name="sample" type="text"
	   label="Sample" optional="false"/>
    <param name="genome_reference" type="text"
	   label="Genome Reference" optional="false"/>
  </inputs>

  <outputs>
    <data format="tabular" name="dsample_ofile"
	  label="${tool.name}_aligned_dsample.tsv"/>
    <data format="tabular" name="dobject_ofile"
	  label="${tool.name}_aligned_dobject.tsv"/>
    <data format="txt" name="log_file"
	  label="${tool.name}.log"/>
  </outputs>

  <stdio>
    <exit_code range="1:" level="fatal" />
  </stdio>

  <help>

  </help>
</tool>