diff galaxy-tools/biobank/utils/prepare_aligned_seq_dsample_import.xml @ 0:ba6cf6ede027 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-tools/biobank/utils/prepare_aligned_seq_dsample_import.xml	Wed Sep 28 06:03:30 2016 -0400
@@ -0,0 +1,58 @@
+<tool id="vl_prepare_aligned_seq_dsample_import" name="VLI.prepare_aligned_seq_dsample_import">
+  <description>
+    Prepare Tabular file to Import Aligned SeqDatasample
+  </description>
+
+  <command interpreter="bash">
+    launcher.sh
+    --interpreter=python
+    --runner=prepare_aligned_seq_dsample_import.py
+    --study=${study}
+    --label=${label}
+    --source=${source}
+    --device=${device}
+    --genome_reference=${genome_reference}
+    --path=${path}
+    --sample=${sample}
+    --logfile=${log_file}
+    --dsample_ofile=${dsample_ofile}
+    --dobject_ofile=${dobject_ofile}
+  </command>
+
+  <inputs>
+
+    <param name="study" type="text"
+	   label="Study" optional="false"/>
+    <param name="label" type="text"
+	   label="Label" optional="false"/>
+    <param name="device" type="text"
+	   label="Device" optional="false"/>
+    <param name="source" type="text"
+	   label="Source" optional="false"/>
+    <param name="path" type="text"
+	   label="Path" optional="false"/>
+    <param name="sample" type="text"
+	   label="Sample" optional="false"/>
+    <param name="genome_reference" type="text"
+	   label="Genome Reference" optional="false"/>
+  </inputs>
+
+  <outputs>
+    <data format="tabular" name="dsample_ofile"
+	  label="${tool.name}_aligned_dsample.tsv"/>
+    <data format="tabular" name="dobject_ofile"
+	  label="${tool.name}_aligned_dobject.tsv"/>
+    <data format="txt" name="log_file"
+	  label="${tool.name}.log"/>
+  </outputs>
+
+  <stdio>
+    <exit_code range="1:" level="fatal" />
+  </stdio>
+
+  <help>
+
+  </help>
+</tool>
+
+