view galaxy-tools/biobank/utils/format_vessels_by_individual_output.xml @ 0:ba6cf6ede027 draft default tip

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<tool id="vl_tools_format_vessels_by_individual" name="VLUTILS.format_vessels_by_individual">
  <description>
    Format the output from VLU.vessels_by_individual into a tabular
    format
  </description>
  <command interpreter="bash">
    launcher.sh
    --interpreter=python
    --runner=format_vessels_by_individual_output.py
    --loglevel=$__app__.config.vl_loglevel
    --logfile=${logfile}
    --in_file=${in_file}
    --map_file=${map_file}
    --out_file=${out_file}
  </command>
  <inputs>
    <param format="tabular" name="in_file" type="data"
	   label="Output file produced by the VLU.vessels_by_individual tool"/>
    <param format="tabular" name="map_file" type="data"
	   label="Individuals ID mapping file"/>
  </inputs>

  <outputs>
    <data format="tabular" name="out_file" label="${tool.name}.tsv"/>
    <data format="txt" name="logfile" label="${tool.name}.log"/>
  </outputs>

  <help>

  </help>
</tool>