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1 <tool id="vl_tools_format_vessels_by_individual" name="VLUTILS.format_vessels_by_individual">
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2 <description>
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3 Format the output from VLU.vessels_by_individual into a tabular
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4 format
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5 </description>
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6 <command interpreter="bash">
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7 launcher.sh
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8 --interpreter=python
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9 --runner=format_vessels_by_individual_output.py
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10 --loglevel=$__app__.config.vl_loglevel
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11 --logfile=${logfile}
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12 --in_file=${in_file}
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13 --map_file=${map_file}
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14 --out_file=${out_file}
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15 </command>
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16 <inputs>
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17 <param format="tabular" name="in_file" type="data"
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18 label="Output file produced by the VLU.vessels_by_individual tool"/>
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19 <param format="tabular" name="map_file" type="data"
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20 label="Individuals ID mapping file"/>
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21 </inputs>
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22
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23 <outputs>
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24 <data format="tabular" name="out_file" label="${tool.name}.tsv"/>
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25 <data format="txt" name="logfile" label="${tool.name}.log"/>
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26 </outputs>
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27
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28 <help>
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29
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30 </help>
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31 </tool> |
