diff galaxy-tools/biobank/tools/gstudio_datasheet.xml @ 0:ba6cf6ede027 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-tools/biobank/tools/gstudio_datasheet.xml	Wed Sep 28 06:03:30 2016 -0400
@@ -0,0 +1,46 @@
+<tool id="vl_tools_gstudio_datasheet" name="VLT.gstudio_datasheet">
+  <description>
+    Build a Genome Studio datasheet for the given plate
+  </description>
+  <command interpreter="bash">
+    launcher.sh
+    --interpreter=python
+    --runner=kb_query.py
+    --host=$__user_omero_host__
+    --user=$__user_omero_user__
+    --passwd=$__user_omero_password__
+    --operator=$__user_email__
+    --logfile=${logfile}
+    --ofile=${outfile}
+    gstudio_datasheet
+    #if str($plate) != 'no_plate'
+      --plate=${plate}
+      --manifest=${manifest}
+    #end if
+  </command>
+  <inputs>
+    <param name="plate" type="select" label="Titer Plate" ajax = "True" ajax-source = "galaxy/get/titer_plates" sort="True"
+	   help="Choose one of the already defined Titer Plates">
+      <option value="no_plate" selected="true">Select a plate from the list</option>
+    </param>
+
+    <param name="manifest" type="select" label="Probes descriptor"
+	   help="Choose one of the manifest file description available">
+      <option value="Immuno_BeadChip_11419691_B.bpm">Immuno Chip</option>
+      <option value="HumanOmniExpress-12v1-Multi_H.bpm">OmniExpress Chip</option>
+      <option value="HumanExome-12v1_A.bpm">Exome Chip</option>
+    </param>
+
+    <!-- ************************************************** -->
+
+  </inputs>
+
+  <outputs>
+    <data format="tabular" name="outfile" label="${plate.value}_samplesheet.csv"/>
+    <data format="txt"     name="logfile" label="${plate.value}_samplesheet.log"/>
+  </outputs>
+  
+  <help>
+    Build a Genome Studio datasheet for the given plate
+  </help>
+</tool>