view galaxy-tools/biobank/tools/gstudio_datasheet.xml @ 0:ba6cf6ede027 draft default tip

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<tool id="vl_tools_gstudio_datasheet" name="VLT.gstudio_datasheet">
  <description>
    Build a Genome Studio datasheet for the given plate
  </description>
  <command interpreter="bash">
    launcher.sh
    --interpreter=python
    --runner=kb_query.py
    --host=$__user_omero_host__
    --user=$__user_omero_user__
    --passwd=$__user_omero_password__
    --operator=$__user_email__
    --logfile=${logfile}
    --ofile=${outfile}
    gstudio_datasheet
    #if str($plate) != 'no_plate'
      --plate=${plate}
      --manifest=${manifest}
    #end if
  </command>
  <inputs>
    <param name="plate" type="select" label="Titer Plate" ajax = "True" ajax-source = "galaxy/get/titer_plates" sort="True"
	   help="Choose one of the already defined Titer Plates">
      <option value="no_plate" selected="true">Select a plate from the list</option>
    </param>

    <param name="manifest" type="select" label="Probes descriptor"
	   help="Choose one of the manifest file description available">
      <option value="Immuno_BeadChip_11419691_B.bpm">Immuno Chip</option>
      <option value="HumanOmniExpress-12v1-Multi_H.bpm">OmniExpress Chip</option>
      <option value="HumanExome-12v1_A.bpm">Exome Chip</option>
    </param>

    <!-- ************************************************** -->

  </inputs>

  <outputs>
    <data format="tabular" name="outfile" label="${plate.value}_samplesheet.csv"/>
    <data format="txt"     name="logfile" label="${plate.value}_samplesheet.log"/>
  </outputs>
  
  <help>
    Build a Genome Studio datasheet for the given plate
  </help>
</tool>