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1 <tool id="vl_tools_gstudio_datasheet" name="VLT.gstudio_datasheet">
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2 <description>
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3 Build a Genome Studio datasheet for the given plate
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4 </description>
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5 <command interpreter="bash">
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6 launcher.sh
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7 --interpreter=python
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8 --runner=kb_query.py
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9 --host=$__user_omero_host__
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10 --user=$__user_omero_user__
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11 --passwd=$__user_omero_password__
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12 --operator=$__user_email__
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13 --logfile=${logfile}
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14 --ofile=${outfile}
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15 gstudio_datasheet
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16 #if str($plate) != 'no_plate'
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17 --plate=${plate}
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18 --manifest=${manifest}
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19 #end if
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20 </command>
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21 <inputs>
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22 <param name="plate" type="select" label="Titer Plate" ajax = "True" ajax-source = "galaxy/get/titer_plates" sort="True"
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23 help="Choose one of the already defined Titer Plates">
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24 <option value="no_plate" selected="true">Select a plate from the list</option>
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25 </param>
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26
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27 <param name="manifest" type="select" label="Probes descriptor"
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28 help="Choose one of the manifest file description available">
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29 <option value="Immuno_BeadChip_11419691_B.bpm">Immuno Chip</option>
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30 <option value="HumanOmniExpress-12v1-Multi_H.bpm">OmniExpress Chip</option>
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31 <option value="HumanExome-12v1_A.bpm">Exome Chip</option>
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32 </param>
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33
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34 <!-- ************************************************** -->
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35
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36 </inputs>
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37
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38 <outputs>
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39 <data format="tabular" name="outfile" label="${plate.value}_samplesheet.csv"/>
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40 <data format="txt" name="logfile" label="${plate.value}_samplesheet.log"/>
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41 </outputs>
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42
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43 <help>
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44 Build a Genome Studio datasheet for the given plate
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45 </help>
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46 </tool>
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